myRT

myRT report for GCA_009742855.1_ASM974285v1

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Seq: WPDV01000169.1 Shigella flexneri strain 2014ZH067 NODE_169_length_6016_cov_441.468_ID_62284, whole genome shotgun sequence (6016 bp)
Overview 1 RT 1: 3-2852 bp Neighborhood of RT #1 [3, 2866] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-173 bp Feature: domain Description: PHA02517 Location: 6-171 bp Feature: domain Description: PHA0251 7 Location: 6-1 71 bp Feature: gene Location: 267-398 bp Feature: domain Description: DDE_Tnp_IS66 Location: 279-372 bp Feature: domain Description: DDE_Tnp_IS66 Location: 279-372 bp Feature: gene Location: 875-2092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061-1715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 061 -1 71 5 bp Feature: domain Description: GIIM Note: maturase Location: 1793-2015 bp Feature: domain Description: GIIM Note: maturase Location: 1 793-201 5 bp Feature: gene Location: 2208-2354 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2220-2331 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2220-2331 bp Feature: gene Location: 2381-2866 bp Feature: domain Description: COG3547 Location: 2399-2852 bp Feature: domain Description: COG3547 Location: 2399-2852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: WPDV01000177.1 Shigella flexneri strain 2014ZH067 NODE_177_length_5707_cov_825.079_ID_62300, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPDV01000035.1 Shigella flexneri strain 2014ZH067 NODE_35_length_35784_cov_464.249_ID_62016, whole genome shotgun sequence (35784 bp)
Overview 1 RT 1: 31989-35738 bp Neighborhood of RT #1 [31989, 35738] ESPR Peptidase_S6 PHA02517 RVT-GII GIIM Feature: gene Location: 31989-32822 bp Feature: domain Description: ESPR Location: 31992-32061 bp Feature: domain Description: ESPR Location: 3 1992-3 2061 bp Feature: domain Description: Peptidase_S6 Location: 32142-32811 bp Feature: domain Description: Peptidase_S6 Location: 3 2142-3 2811 bp Feature: gene Location: 32987-33373 bp Feature: domain Description: PHA02517 Location: 32990-33371 bp Feature: domain Description: PHA02517 Location: 3 2990-3 3 3 71 bp Feature: gene Location: 33550-35073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33823-34555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 823 -3 4555 bp Feature: domain Description: GIIM Note: maturase Location: 34630-34828 bp Feature: domain Description: GIIM Note: maturase Location: 3 463 0-3 4828 bp Feature: gene Location: 35367-35738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)