myRT

myRT report for GCA_009742895.1_ASM974289v1

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Seq: WPEG01000166.1 Shigella flexneri strain 2013ZH106 NODE_166_length_6258_cov_577.598_ID_64992, whole genome shotgun sequence (6258 bp)
Overview 1 RT 1: 2-3094 bp Neighborhood of RT #1 [2, 3108] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-415 bp Feature: domain Description: PHA02517 Location: 5-413 bp Feature: domain Description: PHA0251 7 Location: 5-41 3 bp Feature: gene Location: 509-640 bp Feature: domain Description: DDE_Tnp_IS66 Location: 521-614 bp Feature: domain Description: DDE_Tnp_IS66 Location: 521 -61 4 bp Feature: gene Location: 1201-2334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303-1957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 303-1 957 bp Feature: domain Description: GIIM Note: maturase Location: 2035-2257 bp Feature: domain Description: GIIM Note: maturase Location: 2035-2257 bp Feature: gene Location: 2450-2596 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2462-2573 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2462-2573 bp Feature: gene Location: 2623-3108 bp Feature: domain Description: COG3547 Location: 2641-3094 bp Feature: domain Description: COG3547 Location: 2641 -3094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050)

Seq: WPEG01000229.1 Shigella flexneri strain 2013ZH106 NODE_229_length_2895_cov_585.383_ID_65118, whole genome shotgun sequence (2895 bp)
Overview 1 RT 1: 210-2676 bp Neighborhood of RT #1 [210, 2750] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPEG01000035.1 Shigella flexneri strain 2013ZH106 NODE_35_length_35638_cov_289.625_ID_64730, whole genome shotgun sequence (35638 bp)
Overview 1 RT 1: 28558-35592 bp Neighborhood of RT #1 [28558, 35592] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 28558-32676 bp Feature: domain Description: ESPR Location: 28561-28630 bp Feature: domain Description: ESPR Location: 28561-2863 0 bp Feature: domain Description: Peptidase_S6 Location: 28711-30883 bp Feature: domain Description: Peptidase_S6 Location: 28711-3 0883 bp Feature: domain Description: autotrans_barl Location: 31447-32674 bp Feature: domain Description: autotrans_barl Location: 3 1447-3 2674 bp Feature: gene Location: 32841-33227 bp Feature: domain Description: PHA02517 Location: 32844-33225 bp Feature: domain Description: PHA02517 Location: 3 2844-3 3 225 bp Feature: gene Location: 33404-34927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33677-34409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 677-3 4409 bp Feature: domain Description: GIIM Note: maturase Location: 34484-34682 bp Feature: domain Description: GIIM Note: maturase Location: 3 4484-3 4682 bp Feature: gene Location: 35221-35592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)