myRT

myRT report for GCA_009742915.1_ASM974291v1

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Seq: WPEI01000178.1 Shigella flexneri strain 2013ZH099 NODE_178_length_5707_cov_746.401_ID_64407, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1 364-1 538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 868-2363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPEI01000237.1 Shigella flexneri strain 2013ZH099 NODE_237_length_2736_cov_366.023_ID_64525, whole genome shotgun sequence (2736 bp)
Overview 1 RT 1: 2-2690 bp Neighborhood of RT #1 [2, 2690] PHA02517 RVT-GII GIIM Feature: gene Location: 2-325 bp Feature: domain Description: PHA02517 Location: 5-326 bp Feature: domain Description: PHA02 517 Location: 5-32 6 bp Feature: gene Location: 502-2025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1507 bp Feature: domain Description: GIIM Note: maturase Location: 1582-1780 bp Feature: domain Description: GIIM Note: maturase Location: 1582 -1780 bp Feature: gene Location: 2319-2690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: WPEI01000268.1 Shigella flexneri strain 2013ZH099 NODE_268_length_2088_cov_393.309_ID_64587, whole genome shotgun sequence (2088 bp)
Overview 1 RT 1: 106-2085 bp Neighborhood of RT #1 [106, 2085] DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 106-237 bp Feature: domain Description: DDE_Tnp_IS66 Location: 118-211 bp Feature: domain Description: DDE_Tnp_IS66 Location: 118-211 bp Feature: gene Location: 798-1931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1554 bp Feature: domain Description: GIIM Note: maturase Location: 1632-1854 bp Feature: domain Description: GIIM Note: maturase Location: 163 2-1854 bp Feature: gene Location: 1957-2085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)