myRT

myRT report for GCA_009742935.1_ASM974293v1

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Seq: WPEU01000231.1 Shigella flexneri 2a strain 2013ZH035 NODE_231_length_2796_cov_581.764_ID_66512, whole genome shotgun sequence (2796 bp)
Overview 1 RT 1: 210-2676 bp Neighborhood of RT #1 [210, 2750] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1 364-1 538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 868-2363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPEU01000269.1 Shigella flexneri 2a strain 2013ZH035 NODE_269_length_1978_cov_232.408_ID_66588, whole genome shotgun sequence (1978 bp)
Overview 1 RT 1: 107-1855 bp Neighborhood of RT #1 [107, 1932] DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 107-238 bp Feature: domain Description: DDE_Tnp_IS66 Location: 119-212 bp Feature: domain Description: DDE_Tnp_IS66 Location: 119-2 12 bp Feature: gene Location: 799-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: WPEU01000037.1 Shigella flexneri 2a strain 2013ZH035 NODE_37_length_35638_cov_325.343_ID_66124, whole genome shotgun sequence (35638 bp)
Overview 1 RT 1: 28558-35592 bp Neighborhood of RT #1 [28558, 35592] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 28558-32676 bp Feature: domain Description: ESPR Location: 28561-28630 bp Feature: domain Description: ESPR Location: 28561-2863 0 bp Feature: domain Description: Peptidase_S6 Location: 28711-30883 bp Feature: domain Description: Peptidase_S6 Location: 28711-3 0883 bp Feature: domain Description: autotrans_barl Location: 31447-32674 bp Feature: domain Description: autotrans_barl Location: 3 1447-3 2674 bp Feature: gene Location: 32841-33227 bp Feature: domain Description: PHA02517 Location: 32844-33225 bp Feature: domain Description: PHA02517 Location: 3 2844-3 3 225 bp Feature: gene Location: 33404-34927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33677-34409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 677-3 4409 bp Feature: domain Description: GIIM Note: maturase Location: 34484-34682 bp Feature: domain Description: GIIM Note: maturase Location: 3 4484-3 4682 bp Feature: gene Location: 35221-35592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)