myRT

myRT report for GCA_009742975.1_ASM974297v1

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Seq: WPEV01000169.1 Shigella flexneri 2a strain 2013ZH034 NODE_169_length_5856_cov_198.351_ID_67164, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3151-5854 bp Neighborhood of RT #1 [3151, 5854] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPEV01000216.1 Shigella flexneri 2a strain 2013ZH034 NODE_216_length_2895_cov_499.579_ID_67258, whole genome shotgun sequence (2895 bp)
Overview 1 RT 1: 210-2676 bp Neighborhood of RT #1 [210, 2750] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPEV01000239.1 Shigella flexneri 2a strain 2013ZH034 NODE_239_length_2272_cov_1201.64_ID_67304, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WPEV01000007.1 Shigella flexneri 2a strain 2013ZH034 NODE_7_length_71270_cov_77.9098_ID_66840, whole genome shotgun sequence (71270 bp)
Overview 1 RT 1: 66359-70135 bp Neighborhood of RT #1 [66359, 70135] PRK13732 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 66359-66886 bp Feature: domain Description: PRK13732 Location: 66362-66884 bp Feature: domain Description: PRK13732 Location: 66362-66884 bp Feature: gene Location: 67007-67480 bp Feature: gene Location: 68054-69721 bp Feature: RT Description: RVT_N Location: 68102-68339 bp Feature: RT Description: RVT_N Location: 68102-68339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68390-69032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68390-69032 bp Feature: domain Description: GIIM Note: maturase Location: 69083-69317 bp Feature: domain Description: GIIM Note: maturase Location: 69083-69317 bp Feature: domain Description: HNHc Note: nucleases Location: 69527-69686 bp Feature: domain Description: HNHc Note: nucleases Location: 69527-69686 bp Feature: gene Location: 69699-69884 bp Feature: gene Location: 69941-70135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)