myRT

myRT report for GCA_009743025.1_ASM974302v1

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Seq: WPEZ01000179.1 Shigella flexneri 2a strain 2013ZH018 NODE_179_length_5852_cov_326.306_ID_66317, whole genome shotgun sequence (5852 bp)
Overview 1 RT 1: 2-2688 bp Neighborhood of RT #1 [2, 2702] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-232 bp Feature: gene Location: 711-1928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 897-1551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 897-1 551 bp Feature: domain Description: GIIM Note: maturase Location: 1629-1851 bp Feature: domain Description: GIIM Note: maturase Location: 1 629-1 851 bp Feature: gene Location: 2044-2190 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2056-2167 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2056-21 67 bp Feature: gene Location: 2217-2702 bp Feature: domain Description: COG3547 Location: 2235-2688 bp Feature: domain Description: COG3547 Location: 2235-2688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPEZ01000182.1 Shigella flexneri 2a strain 2013ZH018 NODE_182_length_5707_cov_700.643_ID_66323, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPEZ01000256.1 Shigella flexneri 2a strain 2013ZH018 NODE_256_length_2272_cov_605.969_ID_66471, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)