myRT

myRT report for GCA_009743035.1_ASM974303v1

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Seq: WPFE01000176.1 Shigella flexneri 2a strain 2013ZH005 NODE_176_length_5856_cov_383.298_ID_64577, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3-2692 bp Neighborhood of RT #1 [3, 2706] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-236 bp Feature: gene Location: 715-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 -1 555 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1 633-1 855 bp Feature: gene Location: 2048-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-2171 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-21 71 bp Feature: gene Location: 2221-2706 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPFE01000178.1 Shigella flexneri 2a strain 2013ZH005 NODE_178_length_5707_cov_856.661_ID_64581, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPFE01000035.1 Shigella flexneri 2a strain 2013ZH005 NODE_35_length_35785_cov_403.573_ID_64295, whole genome shotgun sequence (35785 bp)
Overview 1 RT 1: 712-7079 bp Neighborhood of RT #1 [712, 7081] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 712-2235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: gene Location: 2412-2798 bp Feature: domain Description: PHA02517 Location: 2415-2796 bp Feature: domain Description: PHA02517 Location: 2415-2796 bp Feature: gene Location: 2963-7081 bp Feature: domain Description: ESPR Location: 2966-3035 bp Feature: domain Description: ESPR Location: 2966-3 03 5 bp Feature: domain Description: Peptidase_S6 Location: 3116-5288 bp Feature: domain Description: Peptidase_S6 Location: 3 116-5288 bp Feature: domain Description: autotrans_barl Location: 5852-7079 bp Feature: domain Description: autotrans_barl Location: 5852-7079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)