myRT

myRT report for GCA_009743115.1_ASM974311v1

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Seq: WPFJ01000170.1 Shigella flexneri strain 2012ZH119 NODE_170_length_6232_cov_340.925_ID_66191, whole genome shotgun sequence (6232 bp)
Overview 1 RT 1: 3151-5804 bp Neighborhood of RT #1 [3151, 5804] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5610-5804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPFJ01000181.1 Shigella flexneri strain 2012ZH119 NODE_181_length_5707_cov_474.356_ID_66213, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPFJ01000195.1 Shigella flexneri strain 2012ZH119 NODE_195_length_4722_cov_101.334_ID_66241, whole genome shotgun sequence (4722 bp)
Overview 1 RT 1: 1531-4720 bp Neighborhood of RT #1 [1531, 4720] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1531-1851 bp Feature: gene Location: 2103-2285 bp Feature: gene Location: 2565-4232 bp Feature: RT Description: RVT_N Location: 2613-2850 bp Feature: RT Description: RVT_N Location: 2613 -2850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2901-3543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2901-3 543 bp Feature: domain Description: GIIM Note: maturase Location: 3594-3828 bp Feature: domain Description: GIIM Note: maturase Location: 3 594-3 828 bp Feature: domain Description: HNHc Note: nucleases Location: 4038-4197 bp Feature: domain Description: HNHc Note: nucleases Location: 403 8-4197 bp Feature: gene Location: 4511-4720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: WPFJ01000262.1 Shigella flexneri strain 2012ZH119 NODE_262_length_2310_cov_438.787_ID_66375, whole genome shotgun sequence (2310 bp)
Overview 1 RT 1: 103-2291 bp Neighborhood of RT #1 [103, 2291] RVT-GII GIIM Feature: gene Location: 103-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: gene Location: 1920-2291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)