myRT

myRT report for GCA_009743145.1_ASM974314v1

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Seq: WPFL01000171.1 Shigella flexneri 2a strain 2012ZH116 NODE_171_length_6232_cov_474.25_ID_64611, whole genome shotgun sequence (6232 bp)
Overview 1 RT 1: 3-3068 bp Neighborhood of RT #1 [3, 3082] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-389 bp Feature: domain Description: PHA02517 Location: 6-387 bp Feature: domain Description: PHA0251 7 Location: 6-387 bp Feature: gene Location: 483-614 bp Feature: domain Description: DDE_Tnp_IS66 Location: 495-588 bp Feature: domain Description: DDE_Tnp_IS66 Location: 495-588 bp Feature: gene Location: 1175-2308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1277-1931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 277-1 931 bp Feature: domain Description: GIIM Note: maturase Location: 2009-2231 bp Feature: domain Description: GIIM Note: maturase Location: 2009-2231 bp Feature: gene Location: 2424-2570 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2436-2547 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2436-2547 bp Feature: gene Location: 2597-3082 bp Feature: domain Description: COG3547 Location: 2615-3068 bp Feature: domain Description: COG3547 Location: 261 5-3068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050)

Seq: WPFL01000182.1 Shigella flexneri 2a strain 2012ZH116 NODE_182_length_5707_cov_649.689_ID_64633, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPFL01000236.1 Shigella flexneri 2a strain 2012ZH116 NODE_236_length_2724_cov_347.525_ID_64741, whole genome shotgun sequence (2724 bp)
Overview 1 RT 1: 2-2678 bp Neighborhood of RT #1 [2, 2678] PHA02517 RVT-GII GIIM Feature: gene Location: 2-313 bp Feature: domain Description: PHA02517 Location: 5-314 bp Feature: domain Description: PHA02517 Location: 5-3 14 bp Feature: gene Location: 490-2013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763-1495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763 -1495 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1768 bp Feature: domain Description: GIIM Note: maturase Location: 1570-1768 bp Feature: gene Location: 2307-2678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)