myRT

myRT report for GCA_009743215.1_ASM974321v1

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Seq: WPFN01000145.1 Shigella flexneri 2a strain 2012ZH100 NODE_145_length_8874_cov_174.704_ID_70121, whole genome shotgun sequence (8874 bp)
Overview 1 RT 1: 1876-5788 bp Neighborhood of RT #1 [1876, 5788] Antirestrict DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1876-2301 bp Feature: domain Description: Antirestrict Location: 2011-2299 bp Feature: domain Description: Antirestrict Location: 201 1 -2299 bp Feature: gene Location: 2348-2770 bp Feature: domain Description: DUF1380 Location: 2351-2645 bp Feature: domain Description: DUF1 380 Location: 2351 -2645 bp Feature: gene Location: 3272-4939 bp Feature: RT Description: RVT_N Location: 3320-3557 bp Feature: RT Description: RVT_N Location: 3320-3557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3608-4250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3608-4250 bp Feature: domain Description: GIIM Note: maturase Location: 4301-4535 bp Feature: domain Description: GIIM Note: maturase Location: 4301 -4535 bp Feature: domain Description: HNHc Note: nucleases Location: 4745-4904 bp Feature: domain Description: HNHc Note: nucleases Location: 4745-4904 bp Feature: gene Location: 5219-5401 bp Feature: gene Location: 5513-5788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: WPFN01000175.1 Shigella flexneri 2a strain 2012ZH100 NODE_175_length_5856_cov_283.935_ID_70181, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3-2692 bp Neighborhood of RT #1 [3, 2706] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-236 bp Feature: gene Location: 715-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: gene Location: 2048-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-2171 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 060-2 171 bp Feature: gene Location: 2221-2706 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Feature: domain Description: COG3547 Location: 2 2 39-2 692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPFN01000178.1 Shigella flexneri 2a strain 2012ZH100 NODE_178_length_5707_cov_714.462_ID_70187, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 1355-3345 bp Neighborhood of RT #1 [1355, 3345] Tra5 group_II_RT_mat RVT-GII GIIM Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 13 64-153 8 bp Feature: gene Location: 1568-1846 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1700-1844 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1700-1844 bp Feature: gene Location: 1859-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-23 63 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: WPFN01000257.1 Shigella flexneri 2a strain 2012ZH100 NODE_257_length_2272_cov_2068.33_ID_70345, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)