myRT

myRT report for GCA_009743245.1_ASM974324v1

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Seq: WPFO01000260.1 Shigella flexneri 2a strain 2012ZH094 NODE_260_length_1994_cov_80.9551_ID_55842, whole genome shotgun sequence (1994 bp)
Overview 1 RT 1: 3-1871 bp Neighborhood of RT #1 [3, 1948] DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 3-254 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-228 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-228 bp Feature: gene Location: 815-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 7-1 571 bp Feature: domain Description: GIIM Note: maturase Location: 1649-1871 bp Feature: domain Description: GIIM Note: maturase Location: 1 649-1 871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: WPFO01000284.1 Shigella flexneri 2a strain 2012ZH094 NODE_284_length_1397_cov_364.472_ID_55890, whole genome shotgun sequence (1397 bp)
Overview 1 RT 1: 1-1274 bp Neighborhood of RT #1 [1, 1351] Tra5 RVT-GII GIIM Feature: gene Location: 1-156 bp Feature: domain Description: Tra5 Location: 4-139 bp Feature: domain Description: Tra5 Location: 4-139 bp Feature: gene Location: 169-972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469-964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469-964 bp Feature: gene Location: 1025-1351 bp Feature: domain Description: GIIM Note: maturase Location: 1058-1274 bp Feature: domain Description: GIIM Note: maturase Location: 1058-12 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: WPFO01000088.1 Shigella flexneri 2a strain 2012ZH094 NODE_88_length_16964_cov_336.257_ID_55498, whole genome shotgun sequence (16964 bp)
Overview 1 RT 1: 9510-16815 bp Neighborhood of RT #1 [9510, 16961] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 9510-13628 bp Feature: domain Description: ESPR Location: 9513-9582 bp Feature: domain Description: ESPR Location: 9513 -9582 bp Feature: domain Description: Peptidase_S6 Location: 9663-11835 bp Feature: domain Description: Peptidase_S6 Location: 9663 -1183 5 bp Feature: domain Description: autotrans_barl Location: 12399-13626 bp Feature: domain Description: autotrans_barl Location: 123 99-13 626 bp Feature: gene Location: 13793-14179 bp Feature: domain Description: PHA02517 Location: 13796-14177 bp Feature: domain Description: PHA02517 Location: 13 796-14177 bp Feature: gene Location: 14356-15879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-15361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-153 61 bp Feature: domain Description: GIIM Note: maturase Location: 15436-15634 bp Feature: domain Description: GIIM Note: maturase Location: 1543 6-1563 4 bp Feature: gene Location: 16173-16544 bp Feature: gene Location: 16593-16961 bp Feature: domain Description: PHA02517 Location: 16668-16815 bp Feature: domain Description: PHA02517 Location: 16668-16815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)