myRT

myRT report for GCA_009743275.1_ASM974327v1

Download annotations/find similar RTs

Seq: WPFP01000126.1 Shigella flexneri 2a strain 2012ZH090 NODE_126_length_10489_cov_337.854_ID_61894, whole genome shotgun sequence (10489 bp)
Overview 1 RT 1: 2777-5478 bp Neighborhood of RT #1 [2777, 5498] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2777-2932 bp Feature: gene Location: 2958-3329 bp Feature: domain Description: GIIM Note: maturase Location: 3036-3255 bp Feature: domain Description: GIIM Note: maturase Location: 3036-3255 bp Feature: gene Location: 3337-4140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637-4132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3637-41 32 bp Feature: gene Location: 4153-4353 bp Feature: domain Description: Tra5 Location: 4162-4336 bp Feature: domain Description: Tra5 Location: 41 62-4336 bp Feature: gene Location: 4749-5498 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4824-5478 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4824-5478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: WPFP01000261.1 Shigella flexneri 2a strain 2012ZH090 NODE_261_length_2140_cov_236.112_ID_62164, whole genome shotgun sequence (2140 bp)
Overview 1 RT 1: 158-2137 bp Neighborhood of RT #1 [158, 2137] DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 158-289 bp Feature: domain Description: DDE_Tnp_IS66 Location: 170-263 bp Feature: domain Description: DDE_Tnp_IS66 Location: 170-2 63 bp Feature: gene Location: 850-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952 -1606 bp Feature: domain Description: GIIM Note: maturase Location: 1684-1906 bp Feature: domain Description: GIIM Note: maturase Location: 1684-1906 bp Feature: gene Location: 2009-2137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: WPFP01000091.1 Shigella flexneri 2a strain 2012ZH090 NODE_91_length_16590_cov_250.263_ID_61824, whole genome shotgun sequence (16590 bp)
Overview 1 RT 1: 9510-16544 bp Neighborhood of RT #1 [9510, 16544] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 9510-13628 bp Feature: domain Description: ESPR Location: 9513-9582 bp Feature: domain Description: ESPR Location: 9513 -9582 bp Feature: domain Description: Peptidase_S6 Location: 9663-11835 bp Feature: domain Description: Peptidase_S6 Location: 9663 -1183 5 bp Feature: domain Description: autotrans_barl Location: 12399-13626 bp Feature: domain Description: autotrans_barl Location: 123 99-13 626 bp Feature: gene Location: 13793-14179 bp Feature: domain Description: PHA02517 Location: 13796-14177 bp Feature: domain Description: PHA02517 Location: 13 796-14177 bp Feature: gene Location: 14356-15879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-15361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-153 61 bp Feature: domain Description: GIIM Note: maturase Location: 15436-15634 bp Feature: domain Description: GIIM Note: maturase Location: 1543 6-1563 4 bp Feature: gene Location: 16173-16544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)