myRT

myRT report for GCA_009743335.1_ASM974333v1

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Seq: WPFU01000181.1 Shigella flexneri 2a strain 2012ZH053 NODE_181_length_5852_cov_389.521_ID_62945, whole genome shotgun sequence (5852 bp)
Overview 1 RT 1: 3151-5851 bp Neighborhood of RT #1 [3151, 5851] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPFU01000189.1 Shigella flexneri 2a strain 2012ZH053 NODE_189_length_5332_cov_533.618_ID_62961, whole genome shotgun sequence (5332 bp)
Overview 1 RT 1: 210-3288 bp Neighborhood of RT #1 [210, 3288] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPFU01000246.1 Shigella flexneri 2a strain 2012ZH053 NODE_246_length_2380_cov_780.118_ID_63075, whole genome shotgun sequence (2380 bp)
Overview 1 RT 1: 146-2334 bp Neighborhood of RT #1 [146, 2334] RVT-GII GIIM Feature: gene Location: 146-1669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1151 bp Feature: domain Description: GIIM Note: maturase Location: 1226-1424 bp Feature: domain Description: GIIM Note: maturase Location: 1226-1424 bp Feature: gene Location: 1963-2334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)