myRT

myRT report for GCA_009743355.1_ASM974335v1

Download annotations/find similar RTs

Seq: WPFT01000273.1 Shigella flexneri 2a strain 2012ZH069 NODE_273_length_1704_cov_91.2135_ID_56281, whole genome shotgun sequence (1704 bp)
Overview 1 RT 1: 3-1571 bp Neighborhood of RT #1 [3, 1702] DDE_Tnp_IS66 RVT-GII Feature: gene Location: 3-254 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-228 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-228 bp Feature: gene Location: 815-1702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 7-1 571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII

Seq: WPFT01000309.1 Shigella flexneri 2a strain 2012ZH069 NODE_309_length_1051_cov_346.137_ID_56353, whole genome shotgun sequence (1051 bp)
Overview 1 RT 1: 113-908 bp Neighborhood of RT #1 [113, 916] RVT-GII Feature: gene Location: 113-916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413-908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WPFT01000088.1 Shigella flexneri 2a strain 2012ZH069 NODE_88_length_16590_cov_255.924_ID_55911, whole genome shotgun sequence (16590 bp)
Overview 1 RT 1: 712-7079 bp Neighborhood of RT #1 [712, 7081] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 712-2235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: gene Location: 2412-2798 bp Feature: domain Description: PHA02517 Location: 2415-2796 bp Feature: domain Description: PHA02517 Location: 2415-2796 bp Feature: gene Location: 2963-7081 bp Feature: domain Description: ESPR Location: 2966-3035 bp Feature: domain Description: ESPR Location: 2966-3 03 5 bp Feature: domain Description: Peptidase_S6 Location: 3116-5288 bp Feature: domain Description: Peptidase_S6 Location: 3 116-5288 bp Feature: domain Description: autotrans_barl Location: 5852-7079 bp Feature: domain Description: autotrans_barl Location: 5852-7079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)