myRT

myRT report for GCA_009743375.1_ASM974337v1

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Seq: WPFX01000174.1 Shigella flexneri 2a strain 2012ZH023 NODE_174_length_5856_cov_344.061_ID_66883, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3151-5854 bp Neighborhood of RT #1 [3151, 5854] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPFX01000176.1 Shigella flexneri 2a strain 2012ZH023 NODE_176_length_5707_cov_811.593_ID_66887, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 1355-3345 bp Neighborhood of RT #1 [1355, 3345] Tra5 group_II_RT_mat RVT-GII GIIM Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-1846 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1700-1844 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1700-1844 bp Feature: gene Location: 1859-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: WPFX01000249.1 Shigella flexneri 2a strain 2012ZH023 NODE_249_length_2272_cov_2948.92_ID_67033, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)