myRT

myRT report for GCA_009743435.1_ASM974343v1

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Seq: WPFY01000177.1 Shigella flexneri 2a strain 2012ZH020 NODE_177_length_5856_cov_346.184_ID_67585, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3151-5854 bp Neighborhood of RT #1 [3151, 5854] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPFY01000179.1 Shigella flexneri 2a strain 2012ZH020 NODE_179_length_5707_cov_804.954_ID_67589, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPFY01000087.1 Shigella flexneri 2a strain 2012ZH020 NODE_87_length_16590_cov_283.901_ID_67405, whole genome shotgun sequence (16590 bp)
Overview 1 RT 1: 9510-16544 bp Neighborhood of RT #1 [9510, 16544] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 9510-13628 bp Feature: domain Description: ESPR Location: 9513-9582 bp Feature: domain Description: ESPR Location: 9513 -9582 bp Feature: domain Description: Peptidase_S6 Location: 9663-11835 bp Feature: domain Description: Peptidase_S6 Location: 9663 -1183 5 bp Feature: domain Description: autotrans_barl Location: 12399-13626 bp Feature: domain Description: autotrans_barl Location: 123 99-13 626 bp Feature: gene Location: 13793-14179 bp Feature: domain Description: PHA02517 Location: 13796-14177 bp Feature: domain Description: PHA02517 Location: 13 796-14177 bp Feature: gene Location: 14356-15879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-15361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-153 61 bp Feature: domain Description: GIIM Note: maturase Location: 15436-15634 bp Feature: domain Description: GIIM Note: maturase Location: 1543 6-1563 4 bp Feature: gene Location: 16173-16544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)