myRT

myRT report for GCA_009743445.1_ASM974344v1

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Seq: WPGA01000176.1 Shigella flexneri 2a strain 2012ZH015 NODE_176_length_5856_cov_502.222_ID_67572, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3151-5854 bp Neighborhood of RT #1 [3151, 5854] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPGA01000183.1 Shigella flexneri 2a strain 2012ZH015 NODE_183_length_5332_cov_705.219_ID_67586, whole genome shotgun sequence (5332 bp)
Overview 1 RT 1: 210-3288 bp Neighborhood of RT #1 [210, 3288] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPGA01000224.1 Shigella flexneri 2a strain 2012ZH015 NODE_224_length_3129_cov_1166.11_ID_67668, whole genome shotgun sequence (3129 bp)
Overview 1 RT 1: 3-2980 bp Neighborhood of RT #1 [3, 3126] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3-344 bp Feature: domain Description: PHA02517 Location: 6-345 bp Feature: domain Description: PHA02517 Location: 6-3 45 bp Feature: gene Location: 521-2044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1526 bp Feature: domain Description: GIIM Note: maturase Location: 1601-1799 bp Feature: domain Description: GIIM Note: maturase Location: 1601-1799 bp Feature: gene Location: 2338-2709 bp Feature: gene Location: 2758-3126 bp Feature: domain Description: PHA02517 Location: 2833-2980 bp Feature: domain Description: PHA02517 Location: 283 3 -2980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)