myRT

myRT report for GCA_009743505.1_ASM974350v1

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Seq: WPGC01000227.1 Shigella flexneri strain 2012ZH008 NODE_227_length_2796_cov_640.197_ID_63639, whole genome shotgun sequence (2796 bp)
Overview 1 RT 1: 210-2676 bp Neighborhood of RT #1 [210, 2750] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1 364-1 538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 868-2363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPGC01000264.1 Shigella flexneri strain 2012ZH008 NODE_264_length_1978_cov_362.758_ID_63713, whole genome shotgun sequence (1978 bp)
Overview 1 RT 1: 107-1855 bp Neighborhood of RT #1 [107, 1932] DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 107-238 bp Feature: domain Description: DDE_Tnp_IS66 Location: 119-212 bp Feature: domain Description: DDE_Tnp_IS66 Location: 119-2 12 bp Feature: gene Location: 799-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388)

Seq: WPGC01000088.1 Shigella flexneri strain 2012ZH008 NODE_88_length_16590_cov_242.244_ID_63361, whole genome shotgun sequence (16590 bp)
Overview 1 RT 1: 9510-16544 bp Neighborhood of RT #1 [9510, 16544] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 9510-13628 bp Feature: domain Description: ESPR Location: 9513-9582 bp Feature: domain Description: ESPR Location: 9513 -9582 bp Feature: domain Description: Peptidase_S6 Location: 9663-11835 bp Feature: domain Description: Peptidase_S6 Location: 9663 -1183 5 bp Feature: domain Description: autotrans_barl Location: 12399-13626 bp Feature: domain Description: autotrans_barl Location: 123 99-13 626 bp Feature: gene Location: 13793-14179 bp Feature: domain Description: PHA02517 Location: 13796-14177 bp Feature: domain Description: PHA02517 Location: 13 796-14177 bp Feature: gene Location: 14356-15879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-15361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-153 61 bp Feature: domain Description: GIIM Note: maturase Location: 15436-15634 bp Feature: domain Description: GIIM Note: maturase Location: 1543 6-1563 4 bp Feature: gene Location: 16173-16544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)