myRT

myRT report for GCA_009743595.1_ASM974359v1

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Seq: WPGH01000177.1 Shigella flexneri 2a strain 2011BJ21 NODE_177_length_6745_cov_40.1251_ID_38222, whole genome shotgun sequence (6745 bp)
Overview 1 RT 1: 3749-6402 bp Neighborhood of RT #1 [3749, 6402] COG3547 RVT-GII GIIM Feature: gene Location: 3749-4234 bp Feature: domain Description: COG3547 Location: 3767-4220 bp Feature: domain Description: COG3547 Location: 3767-4220 bp Feature: gene Location: 4330-4497 bp Feature: gene Location: 4523-5740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4709-5363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4709-5363 bp Feature: domain Description: GIIM Note: maturase Location: 5441-5663 bp Feature: domain Description: GIIM Note: maturase Location: 5441 -5663 bp Feature: gene Location: 5751-6134 bp Feature: gene Location: 6208-6402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPGH01000228.1 Shigella flexneri 2a strain 2011BJ21 NODE_228_length_4226_cov_36.1717_ID_38324, whole genome shotgun sequence (4226 bp)
Overview 1 RT 1: 1-2018 bp Neighborhood of RT #1 [1, 2018] Tra5 RVT-GII GIIM Feature: gene Location: 1-228 bp Feature: domain Description: Tra5 Location: 7-211 bp Feature: domain Description: Tra5 Location: 7-2 11 bp Feature: gene Location: 241-1044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541-1036 bp Feature: gene Location: 1097-1423 bp Feature: domain Description: GIIM Note: maturase Location: 1130-1349 bp Feature: domain Description: GIIM Note: maturase Location: 1130-1349 bp Feature: gene Location: 1776-2018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: WPGH01000277.1 Shigella flexneri 2a strain 2011BJ21 NODE_277_length_2902_cov_174.161_ID_38422, whole genome shotgun sequence (2902 bp)
Overview 1 RT 1: 3-2834 bp Neighborhood of RT #1 [3, 2899] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3-404 bp Feature: domain Description: PHA02517 Location: 6-405 bp Feature: domain Description: PHA02517 Location: 6-405 bp Feature: gene Location: 521-2044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1526 bp Feature: domain Description: GIIM Note: maturase Location: 1601-1799 bp Feature: domain Description: GIIM Note: maturase Location: 1601-1799 bp Feature: gene Location: 2636-2899 bp Feature: domain Description: PHA02517 Location: 2639-2834 bp Feature: domain Description: PHA02517 Location: 263 9-283 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)