myRT

myRT report for GCA_009743655.1_ASM974365v1

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Seq: WPGJ01000117.1 Shigella flexneri strain 2009BJ26 NODE_117_length_12225_cov_45.2133_ID_60031, whole genome shotgun sequence (12225 bp)
Overview 1 RT 1: 1003-5857 bp Neighborhood of RT #1 [1003, 5862] DUF1380 RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1003-1425 bp Feature: domain Description: DUF1380 Location: 1006-1300 bp Feature: domain Description: DUF1 380 Location: 1 006-1 300 bp Feature: gene Location: 1510-2472 bp Feature: gene Location: 3035-4936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3302-4133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3302-41 33 bp Feature: domain Description: Intron_maturas2 Location: 4247-4505 bp Feature: domain Description: Intron_maturas2 Location: 4247-4505 bp Feature: domain Description: HNHc Note: nucleases Location: 4679-4841 bp Feature: domain Description: HNHc Note: nucleases Location: 4679-4841 bp Feature: gene Location: 5131-5571 bp Feature: domain Description: PRK13732 Location: 5137-5569 bp Feature: domain Description: PRK1 3732 Location: 51 37-5569 bp Feature: gene Location: 5629-5862 bp Feature: domain Description: DUF905 Location: 5659-5857 bp Feature: domain Description: DUF905 Location: 5659-5857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: WPGJ01000176.1 Shigella flexneri strain 2009BJ26 NODE_176_length_6219_cov_71.7963_ID_60149, whole genome shotgun sequence (6219 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 32 41-3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPGJ01000190.1 Shigella flexneri strain 2009BJ26 NODE_190_length_5689_cov_58.0494_ID_60177, whole genome shotgun sequence (5689 bp)
Overview 1 RT 1: 346-3481 bp Neighborhood of RT #1 [346, 3481] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 346-1095 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: gene Location: 1491-1691 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: gene Location: 1704-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: gene Location: 2560-2886 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2593 -2812 bp Feature: gene Location: 3239-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: WPGJ01000034.1 Shigella flexneri strain 2009BJ26 NODE_34_length_36263_cov_49.1951_ID_59865, whole genome shotgun sequence (36263 bp)
Overview 1 RT 1: 1-7695 bp Neighborhood of RT #1 [1, 7697] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-150 bp Feature: gene Location: 254-736 bp Feature: domain Description: PHA02517 Location: 317-671 bp Feature: domain Description: PHA02517 Location: 317-671 bp Feature: gene Location: 1328-2851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1601-2333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1601-2333 bp Feature: domain Description: GIIM Note: maturase Location: 2408-2606 bp Feature: domain Description: GIIM Note: maturase Location: 24 08-2606 bp Feature: gene Location: 3028-3414 bp Feature: domain Description: PHA02517 Location: 3031-3412 bp Feature: domain Description: PHA02517 Location: 3031-34 12 bp Feature: gene Location: 3579-7697 bp Feature: domain Description: ESPR Location: 3582-3651 bp Feature: domain Description: ESPR Location: 3582-3651 bp Feature: domain Description: Peptidase_S6 Location: 3732-5904 bp Feature: domain Description: Peptidase_S6 Location: 3732-5904 bp Feature: domain Description: autotrans_barl Location: 6468-7695 bp Feature: domain Description: autotrans_barl Location: 64 68-7695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)