myRT

myRT report for GCA_009743675.1_ASM974367v1

Download annotations/find similar RTs

Seq: WPGM01000166.1 Shigella flexneri strain 2008BJ19 NODE_166_length_5972_cov_9.07819_ID_53246, whole genome shotgun sequence (5972 bp)
Overview 1 RT 1: 2011-4712 bp Neighborhood of RT #1 [2011, 4732] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2011-2166 bp Feature: gene Location: 2192-2563 bp Feature: domain Description: GIIM Note: maturase Location: 2270-2489 bp Feature: domain Description: GIIM Note: maturase Location: 2270-2489 bp Feature: gene Location: 2571-3374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871-3366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2871 -3366 bp Feature: gene Location: 3387-3587 bp Feature: domain Description: Tra5 Location: 3396-3570 bp Feature: domain Description: Tra5 Location: 3396-3570 bp Feature: gene Location: 3983-4732 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4058-4712 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4058-471 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: WPGM01000169.1 Shigella flexneri strain 2008BJ19 NODE_169_length_5792_cov_5.26267_ID_53252, whole genome shotgun sequence (5792 bp)
Overview 1 RT 1: 501-4203 bp Neighborhood of RT #1 [501, 4217] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 501-848 bp Feature: domain Description: TnpB_IS66 Location: 528-819 bp Feature: domain Description: TnpB_IS66 Location: 52 8-819 bp Feature: gene Location: 868-1749 bp Feature: domain Description: COG3436 Location: 1177-1651 bp Feature: domain Description: COG3436 Location: 1177-1651 bp Feature: gene Location: 2310-3443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2412-3066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 412 -3066 bp Feature: domain Description: GIIM Note: maturase Location: 3144-3366 bp Feature: domain Description: GIIM Note: maturase Location: 3144-3366 bp Feature: gene Location: 3559-3705 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3571-3682 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3571-3682 bp Feature: gene Location: 3732-4217 bp Feature: domain Description: COG3547 Location: 3750-4203 bp Feature: domain Description: COG3547 Location: 3750-42 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), TnpB_IS66 (pfam05717), COG3436 (Transposase )

Seq: WPGM01000078.1 Shigella flexneri strain 2008BJ19 NODE_78_length_19147_cov_86.277_ID_53070, whole genome shotgun sequence (19147 bp)
Overview 1 RT 1: 11455-18590 bp Neighborhood of RT #1 [11455, 18655] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 11455-15573 bp Feature: domain Description: ESPR Location: 11458-11527 bp Feature: domain Description: ESPR Location: 11458-11527 bp Feature: domain Description: Peptidase_S6 Location: 11608-13780 bp Feature: domain Description: Peptidase_S6 Location: 11608-13 780 bp Feature: domain Description: autotrans_barl Location: 14344-15571 bp Feature: domain Description: autotrans_barl Location: 143 44-15571 bp Feature: gene Location: 15738-16124 bp Feature: domain Description: PHA02517 Location: 15741-16122 bp Feature: domain Description: PHA02517 Location: 15741-16122 bp Feature: gene Location: 16301-17824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16574-17306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16574-173 06 bp Feature: domain Description: GIIM Note: maturase Location: 17381-17579 bp Feature: domain Description: GIIM Note: maturase Location: 173 81-17579 bp Feature: gene Location: 17778-18203 bp Feature: gene Location: 18416-18655 bp Feature: domain Description: PHA02517 Location: 18419-18590 bp Feature: domain Description: PHA02517 Location: 18419-18590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)