myRT

myRT report for GCA_009743685.1_ASM974368v1

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Seq: WPGK01000100.1 Shigella flexneri strain 2009BJ20 NODE_100_length_13303_cov_52.258_ID_55054, whole genome shotgun sequence (13303 bp)
Overview 1 RT 1: 2564-5265 bp Neighborhood of RT #1 [2564, 5285] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2564-2719 bp Feature: gene Location: 2745-3116 bp Feature: domain Description: GIIM Note: maturase Location: 2823-3042 bp Feature: domain Description: GIIM Note: maturase Location: 2823-3042 bp Feature: gene Location: 3124-3927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424-3919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424-391 9 bp Feature: gene Location: 3940-4140 bp Feature: domain Description: Tra5 Location: 3949-4123 bp Feature: domain Description: Tra5 Location: 3949-41 23 bp Feature: gene Location: 4536-5285 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4611-5265 bp Feature: domain Description: PAP2_acid_phosphatase Location: 461 1 -5265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: WPGK01000036.1 Shigella flexneri strain 2009BJ20 NODE_36_length_35740_cov_67.3872_ID_54926, whole genome shotgun sequence (35740 bp)
Overview 1 RT 1: 1-7151 bp Neighborhood of RT #1 [1, 7153] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02 517 Location: 4-12 7 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2 062 bp Feature: gene Location: 2484-2870 bp Feature: domain Description: PHA02517 Location: 2487-2868 bp Feature: domain Description: PHA02 517 Location: 2 487-2 868 bp Feature: gene Location: 3035-7153 bp Feature: domain Description: ESPR Location: 3038-3107 bp Feature: domain Description: ESPR Location: 3038-3107 bp Feature: domain Description: Peptidase_S6 Location: 3188-5360 bp Feature: domain Description: Peptidase_S6 Location: 3188-5360 bp Feature: domain Description: autotrans_barl Location: 5924-7151 bp Feature: domain Description: autotrans_barl Location: 592 4-7151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: WPGK01000083.1 Shigella flexneri strain 2009BJ20 NODE_83_length_17251_cov_54.9503_ID_55020, whole genome shotgun sequence (17251 bp)
Overview 1 RT 1: 14314-16967 bp Neighborhood of RT #1 [14314, 16967] COG3547 RVT-GII GIIM Feature: gene Location: 14314-14799 bp Feature: domain Description: COG3547 Location: 14332-14785 bp Feature: domain Description: COG3 547 Location: 143 3 2-14785 bp Feature: gene Location: 14895-15062 bp Feature: gene Location: 15088-16305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15274-15928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15274-15928 bp Feature: domain Description: GIIM Note: maturase Location: 16006-16228 bp Feature: domain Description: GIIM Note: maturase Location: 16006-16228 bp Feature: gene Location: 16316-16699 bp Feature: gene Location: 16773-16967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)