myRT

myRT report for GCA_009743695.1_ASM974369v1

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Seq: WPGL01000100.1 Shigella flexneri strain 2008BJ28 NODE_100_length_13430_cov_92.4737_ID_54903, whole genome shotgun sequence (13430 bp)
Overview 1 RT 1: 8087-11222 bp Neighborhood of RT #1 [8087, 11222] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 8087-8836 bp Feature: domain Description: PAP2_acid_phosphatase Location: 8162-8816 bp Feature: domain Description: PAP2_acid_phosphatase Location: 81 62-881 6 bp Feature: gene Location: 9232-9432 bp Feature: domain Description: Tra5 Location: 9241-9415 bp Feature: domain Description: Tra5 Location: 9241 -941 5 bp Feature: gene Location: 9445-10248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9745-10240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9745-1 0240 bp Feature: gene Location: 10301-10627 bp Feature: domain Description: GIIM Note: maturase Location: 10334-10553 bp Feature: domain Description: GIIM Note: maturase Location: 1 0334-1 0553 bp Feature: gene Location: 10980-11222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII

Seq: WPGL01000037.1 Shigella flexneri strain 2008BJ28 NODE_37_length_35815_cov_62.6222_ID_54777, whole genome shotgun sequence (35815 bp)
Overview 1 RT 1: 1-7226 bp Neighborhood of RT #1 [1, 7228] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-267 bp Feature: domain Description: PHA02517 Location: 4-202 bp Feature: domain Description: PHA02 517 Location: 4-2 02 bp Feature: gene Location: 859-2382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132 -1864 bp Feature: domain Description: GIIM Note: maturase Location: 1939-2137 bp Feature: domain Description: GIIM Note: maturase Location: 1939-2 137 bp Feature: gene Location: 2559-2945 bp Feature: domain Description: PHA02517 Location: 2562-2943 bp Feature: domain Description: PHA02 517 Location: 2 562 -2 943 bp Feature: gene Location: 3110-7228 bp Feature: domain Description: ESPR Location: 3113-3182 bp Feature: domain Description: ESPR Location: 3113-3182 bp Feature: domain Description: Peptidase_S6 Location: 3263-5435 bp Feature: domain Description: Peptidase_S6 Location: 32 63-5435 bp Feature: domain Description: autotrans_barl Location: 5999-7226 bp Feature: domain Description: autotrans_barl Location: 5999-72 2 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: WPGL01000084.1 Shigella flexneri strain 2008BJ28 NODE_84_length_17309_cov_93.5893_ID_54871, whole genome shotgun sequence (17309 bp)
Overview 1 RT 1: 2-2983 bp Neighborhood of RT #1 [2, 2997] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-304 bp Feature: domain Description: PHA02517 Location: 5-302 bp Feature: domain Description: PHA02517 Location: 5-3 02 bp Feature: gene Location: 398-529 bp Feature: domain Description: DDE_Tnp_IS66 Location: 410-503 bp Feature: domain Description: DDE_Tnp_IS66 Location: 410-503 bp Feature: gene Location: 1006-2223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1192-1846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1192-1846 bp Feature: domain Description: GIIM Note: maturase Location: 1924-2146 bp Feature: domain Description: GIIM Note: maturase Location: 1924-2146 bp Feature: gene Location: 2339-2485 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2351-2462 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 23 51-2462 bp Feature: gene Location: 2512-2997 bp Feature: domain Description: COG3547 Location: 2530-2983 bp Feature: domain Description: COG3 547 Location: 253 0-2983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050)