myRT

myRT report for GCA_009743735.1_ASM974373v1

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Seq: WPGN01000176.1 Shigella flexneri strain 2007BJ27 NODE_176_length_6160_cov_61.9504_ID_49378, whole genome shotgun sequence (6160 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 3241 -3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 83-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 491 5-51 37 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPGN01000191.1 Shigella flexneri strain 2007BJ27 NODE_191_length_5630_cov_41.6844_ID_49408, whole genome shotgun sequence (5630 bp)
Overview 1 RT 1: 346-3481 bp Neighborhood of RT #1 [346, 3481] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 346-1095 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 42 1-1075 bp Feature: gene Location: 1491-1691 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: gene Location: 1704-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 004-2 499 bp Feature: gene Location: 2560-2886 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2 593-2 812 bp Feature: gene Location: 3239-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: WPGN01000277.1 Shigella flexneri strain 2007BJ27 NODE_277_length_2356_cov_128.794_ID_49580, whole genome shotgun sequence (2356 bp)
Overview 1 RT 1: 103-2291 bp Neighborhood of RT #1 [103, 2291] RVT-GII GIIM Feature: gene Location: 103-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 76-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1183 -13 81 bp Feature: gene Location: 1920-2291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)