myRT

myRT report for GCA_009743755.1_ASM974375v1

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Seq: WPGO01000166.1 Shigella flexneri strain 2007BJ14 NODE_166_length_6465_cov_81.894_ID_55284, whole genome shotgun sequence (6465 bp)
Overview 1 RT 1: 3528-6181 bp Neighborhood of RT #1 [3528, 6181] COG3547 RVT-GII GIIM Feature: gene Location: 3528-4013 bp Feature: domain Description: COG3547 Location: 3546-3999 bp Feature: domain Description: COG3547 Location: 3546-3999 bp Feature: gene Location: 4109-4276 bp Feature: gene Location: 4302-5519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4488-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4488-51 42 bp Feature: domain Description: GIIM Note: maturase Location: 5220-5442 bp Feature: domain Description: GIIM Note: maturase Location: 5220-5442 bp Feature: gene Location: 5530-5913 bp Feature: gene Location: 5987-6181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPGO01000183.1 Shigella flexneri strain 2007BJ14 NODE_183_length_5630_cov_79.1138_ID_55318, whole genome shotgun sequence (5630 bp)
Overview 1 RT 1: 346-3481 bp Neighborhood of RT #1 [346, 3481] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 346-1095 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 42 1-1075 bp Feature: gene Location: 1491-1691 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: gene Location: 1704-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 004-2 499 bp Feature: gene Location: 2560-2886 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2 593-2 812 bp Feature: gene Location: 3239-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: WPGO01000022.1 Shigella flexneri strain 2007BJ14 NODE_22_length_52798_cov_70.8894_ID_54996, whole genome shotgun sequence (52798 bp)
Overview 1 RT 1: 3-3198 bp Neighborhood of RT #1 [3, 3198] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3-155 bp Feature: domain Description: PHA02517 Location: 6-90 bp Feature: domain Description: PHA02517 Location: 6-90 bp Feature: gene Location: 747-2270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020-1752 bp Feature: domain Description: GIIM Note: maturase Location: 1827-2025 bp Feature: domain Description: GIIM Note: maturase Location: 1827-2025 bp Feature: gene Location: 2447-2833 bp Feature: domain Description: PHA02517 Location: 2450-2831 bp Feature: domain Description: PHA02517 Location: 2450-283 1 bp Feature: gene Location: 2884-3198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)