myRT

myRT report for GCA_009743795.1_ASM974379v1

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Seq: WPGQ01000274.1 Shigella flexneri strain 2007BJ08 NODE_274_length_3237_cov_32.791_ID_38118, whole genome shotgun sequence (3237 bp)
Overview 1 RT 1: 1634-3217 bp Neighborhood of RT #1 [1634, 3234] GIIM RVT-GII Tra5 Feature: gene Location: 1634-1789 bp Feature: gene Location: 1815-2186 bp Feature: domain Description: GIIM Note: maturase Location: 1893-2112 bp Feature: domain Description: GIIM Note: maturase Location: 1 893-21 1 2 bp Feature: gene Location: 2194-2997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2494-2989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2494-2989 bp Feature: gene Location: 3010-3234 bp Feature: domain Description: Tra5 Location: 3019-3217 bp Feature: domain Description: Tra5 Location: 301 9-321 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)

Seq: WPGQ01000279.1 Shigella flexneri strain 2007BJ08 NODE_279_length_3088_cov_89.4482_ID_38128, whole genome shotgun sequence (3088 bp)
Overview 1 RT 1: 92-2745 bp Neighborhood of RT #1 [92, 2745] COG3547 RVT-GII GIIM Feature: gene Location: 92-577 bp Feature: domain Description: COG3547 Location: 110-563 bp Feature: domain Description: COG3547 Location: 110-563 bp Feature: gene Location: 673-840 bp Feature: gene Location: 866-1999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-162 2 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1922 bp Feature: domain Description: GIIM Note: maturase Location: 1700-192 2 bp Feature: gene Location: 2094-2477 bp Feature: gene Location: 2551-2745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: WPGQ01000320.1 Shigella flexneri strain 2007BJ08 NODE_320_length_2272_cov_180.475_ID_38210, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)