myRT

myRT report for GCA_009743815.1_ASM974381v1

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Seq: WPGS01000171.1 Shigella flexneri strain 2006BJ24 NODE_171_length_6219_cov_139.387_ID_55254, whole genome shotgun sequence (6219 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 3241 -3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 83-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 491 5-51 37 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPGS01000181.1 Shigella flexneri strain 2006BJ24 NODE_181_length_5689_cov_124.269_ID_55274, whole genome shotgun sequence (5689 bp)
Overview 1 RT 1: 346-3481 bp Neighborhood of RT #1 [346, 3481] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 346-1095 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 42 1-1075 bp Feature: gene Location: 1491-1691 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: gene Location: 1704-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 004-2 499 bp Feature: gene Location: 2560-2886 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2 593-2 812 bp Feature: gene Location: 3239-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: WPGS01000022.1 Shigella flexneri strain 2006BJ24 NODE_22_length_53169_cov_102.247_ID_54956, whole genome shotgun sequence (53169 bp)
Overview 1 RT 1: 1-7226 bp Neighborhood of RT #1 [1, 7228] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-267 bp Feature: domain Description: PHA02517 Location: 4-202 bp Feature: domain Description: PHA02517 Location: 4-202 bp Feature: gene Location: 859-2382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 2-1864 bp Feature: domain Description: GIIM Note: maturase Location: 1939-2137 bp Feature: domain Description: GIIM Note: maturase Location: 193 9-213 7 bp Feature: gene Location: 2559-2945 bp Feature: domain Description: PHA02517 Location: 2562-2943 bp Feature: domain Description: PHA02517 Location: 2562-2943 bp Feature: gene Location: 3110-7228 bp Feature: domain Description: ESPR Location: 3113-3182 bp Feature: domain Description: ESPR Location: 3 113 -3 182 bp Feature: domain Description: Peptidase_S6 Location: 3263-5435 bp Feature: domain Description: Peptidase_S6 Location: 3 263 -543 5 bp Feature: domain Description: autotrans_barl Location: 5999-7226 bp Feature: domain Description: autotrans_barl Location: 5999-7226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)