myRT

myRT report for GCA_009743825.1_ASM974382v1

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Seq: WPGT01000101.1 Shigella flexneri strain 2005BJ17 NODE_101_length_13362_cov_49.3183_ID_54961, whole genome shotgun sequence (13362 bp)
Overview 1 RT 1: 8019-11154 bp Neighborhood of RT #1 [8019, 11154] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 8019-8768 bp Feature: domain Description: PAP2_acid_phosphatase Location: 8094-8748 bp Feature: domain Description: PAP2_acid_phosphatase Location: 8094-8748 bp Feature: gene Location: 9164-9364 bp Feature: domain Description: Tra5 Location: 9173-9347 bp Feature: domain Description: Tra5 Location: 91 73-9347 bp Feature: gene Location: 9377-10180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9677-10172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9677-1 01 72 bp Feature: gene Location: 10233-10559 bp Feature: domain Description: GIIM Note: maturase Location: 10266-10485 bp Feature: domain Description: GIIM Note: maturase Location: 1 0266-1 0485 bp Feature: gene Location: 10912-11154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII

Seq: WPGT01000036.1 Shigella flexneri strain 2005BJ17 NODE_36_length_35719_cov_40.1207_ID_54831, whole genome shotgun sequence (35719 bp)
Overview 1 RT 1: 1-7151 bp Neighborhood of RT #1 [1, 7153] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02 517 Location: 4-12 7 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2 062 bp Feature: gene Location: 2484-2870 bp Feature: domain Description: PHA02517 Location: 2487-2868 bp Feature: domain Description: PHA02 517 Location: 2 487-2 868 bp Feature: gene Location: 3035-7153 bp Feature: domain Description: ESPR Location: 3038-3107 bp Feature: domain Description: ESPR Location: 3038-3107 bp Feature: domain Description: Peptidase_S6 Location: 3188-5360 bp Feature: domain Description: Peptidase_S6 Location: 3188-5360 bp Feature: domain Description: autotrans_barl Location: 5924-7151 bp Feature: domain Description: autotrans_barl Location: 592 4-7151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: WPGT01000084.1 Shigella flexneri strain 2005BJ17 NODE_84_length_17310_cov_49.4165_ID_54927, whole genome shotgun sequence (17310 bp)
Overview 1 RT 1: 14314-16967 bp Neighborhood of RT #1 [14314, 16967] COG3547 RVT-GII GIIM Feature: gene Location: 14314-14799 bp Feature: domain Description: COG3547 Location: 14332-14785 bp Feature: domain Description: COG3 547 Location: 143 3 2-14785 bp Feature: gene Location: 14895-15062 bp Feature: gene Location: 15088-16305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15274-15928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15274-15928 bp Feature: domain Description: GIIM Note: maturase Location: 16006-16228 bp Feature: domain Description: GIIM Note: maturase Location: 16006-16228 bp Feature: gene Location: 16316-16699 bp Feature: gene Location: 16773-16967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)