myRT

myRT report for GCA_009743875.1_ASM974387v1

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Seq: WPGU01000116.1 Shigella flexneri strain 2005BJ16 NODE_116_length_12209_cov_75.7474_ID_40778, whole genome shotgun sequence (12149 bp)
Overview 1 RT 1: 1-7151 bp Neighborhood of RT #1 [1, 7153] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA0251 7 Location: 4-1 27 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 057-1 789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1 864-2062 bp Feature: gene Location: 2484-2870 bp Feature: domain Description: PHA02517 Location: 2487-2868 bp Feature: domain Description: PHA0251 7 Location: 2487-2868 bp Feature: gene Location: 3035-7153 bp Feature: domain Description: ESPR Location: 3038-3107 bp Feature: domain Description: ESPR Location: 3038-31 07 bp Feature: domain Description: Peptidase_S6 Location: 3188-5360 bp Feature: domain Description: Peptidase_S6 Location: 31 88-5360 bp Feature: domain Description: autotrans_barl Location: 5924-7151 bp Feature: domain Description: autotrans_barl Location: 5924-71 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: WPGU01000183.1 Shigella flexneri strain 2005BJ16 NODE_183_length_7041_cov_80.2452_ID_40912, whole genome shotgun sequence (7041 bp)
Overview 1 RT 1: 3749-6402 bp Neighborhood of RT #1 [3749, 6402] COG3547 RVT-GII GIIM Feature: gene Location: 3749-4234 bp Feature: domain Description: COG3547 Location: 3767-4220 bp Feature: domain Description: COG3547 Location: 3767-42 2 0 bp Feature: gene Location: 4330-4497 bp Feature: gene Location: 4523-5740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4709-5363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4709-5363 bp Feature: domain Description: GIIM Note: maturase Location: 5441-5663 bp Feature: domain Description: GIIM Note: maturase Location: 5441-5663 bp Feature: gene Location: 5751-6134 bp Feature: gene Location: 6208-6402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPGU01000305.1 Shigella flexneri strain 2005BJ16 NODE_305_length_2554_cov_36.4429_ID_41156, whole genome shotgun sequence (2554 bp)
Overview 1 RT 1: 951-2534 bp Neighborhood of RT #1 [951, 2551] GIIM RVT-GII Tra5 Feature: gene Location: 951-1106 bp Feature: gene Location: 1132-1503 bp Feature: domain Description: GIIM Note: maturase Location: 1210-1429 bp Feature: domain Description: GIIM Note: maturase Location: 1210-1429 bp Feature: gene Location: 1511-2314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811-2306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811-23 06 bp Feature: gene Location: 2327-2551 bp Feature: domain Description: Tra5 Location: 2336-2534 bp Feature: domain Description: Tra5 Location: 23 3 6-253 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801)