myRT

myRT report for GCA_009743915.1_ASM974391v1

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Seq: WPGW01000104.1 Shigella flexneri strain 2005BJ02 NODE_104_length_12767_cov_84.0732_ID_49549, whole genome shotgun sequence (12767 bp)
Overview 1 RT 1: 172-7613 bp Neighborhood of RT #1 [172, 7615] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 172-654 bp Feature: domain Description: PHA02517 Location: 235-589 bp Feature: domain Description: PHA0251 7 Location: 235-589 bp Feature: gene Location: 1246-2769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1519-2251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 9-2251 bp Feature: domain Description: GIIM Note: maturase Location: 2326-2524 bp Feature: domain Description: GIIM Note: maturase Location: 2326-2524 bp Feature: gene Location: 2946-3332 bp Feature: domain Description: PHA02517 Location: 2949-3330 bp Feature: domain Description: PHA0251 7 Location: 2949-3330 bp Feature: gene Location: 3497-7615 bp Feature: domain Description: ESPR Location: 3500-3569 bp Feature: domain Description: ESPR Location: 3500-3569 bp Feature: domain Description: Peptidase_S6 Location: 3650-5822 bp Feature: domain Description: Peptidase_S6 Location: 3650-5822 bp Feature: domain Description: autotrans_barl Location: 6386-7613 bp Feature: domain Description: autotrans_barl Location: 6386-761 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: WPGW01000180.1 Shigella flexneri strain 2005BJ02 NODE_180_length_6160_cov_101.896_ID_49701, whole genome shotgun sequence (6160 bp)
Overview 1 RT 1: 3223-5876 bp Neighborhood of RT #1 [3223, 5876] COG3547 RVT-GII GIIM Feature: gene Location: 3223-3708 bp Feature: domain Description: COG3547 Location: 3241-3694 bp Feature: domain Description: COG3547 Location: 32 41-3694 bp Feature: gene Location: 3804-3971 bp Feature: gene Location: 3997-5214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4183-4837 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: gene Location: 5225-5608 bp Feature: gene Location: 5682-5876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPGW01000195.1 Shigella flexneri strain 2005BJ02 NODE_195_length_5630_cov_64.4156_ID_49731, whole genome shotgun sequence (5630 bp)
Overview 1 RT 1: 346-3481 bp Neighborhood of RT #1 [346, 3481] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 346-1095 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: domain Description: PAP2_acid_phosphatase Location: 421-1075 bp Feature: gene Location: 1491-1691 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: domain Description: Tra5 Location: 1500-1674 bp Feature: gene Location: 1704-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2004-2499 bp Feature: gene Location: 2560-2886 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2812 bp Feature: domain Description: GIIM Note: maturase Location: 2593 -2812 bp Feature: gene Location: 3239-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)