myRT

myRT report for GCA_009744055.1_ASM974405v1

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Seq: WPHM01000018.1 Agrobacterium vitis strain CG989 CG989_18, whole genome shotgun sequence (112799 bp)
Overview 1 RT 1: 27146-33292 bp Neighborhood of RT #1 [27146, 33292] UvrD UvrD RVT-Retrons DUF1612 HTH_13 Feature: gene Location: 27146-28876 bp Feature: domain Description: UvrD Location: 27173-28004 bp Feature: domain Description: UvrD Location: 271 73-28004 bp Feature: domain Description: UvrD Location: 28628-28820 bp Feature: domain Description: UvrD Location: 28628-28820 bp Feature: gene Location: 28979-30220 bp Feature: gene Location: 30402-31577 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30663-31293 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30663-31 293 bp Feature: gene Location: 31770-32900 bp Feature: domain Description: DUF1612 Location: 32334-32712 bp Feature: domain Description: DUF1 61 2 Location: 32334-3271 2 bp Feature: domain Description: HTH_13 Location: 32739-32898 bp Feature: domain Description: HTH_1 3 Location: 32739-32898 bp Feature: gene Location: 33068-33292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-Retrons, DUF1612 (pfam07756), HTH_13 (pfam11972)

Seq: WPHM01000004.1 Agrobacterium vitis strain CG989 CG989_4, whole genome shotgun sequence (486029 bp)
Overview 1 RT 1: 201660-206349 bp Neighborhood of RT #1 [201660, 206393] PRK13875 RVT-GII GIIM other_trbK PRK13874 Feature: gene Location: 201660-203051 bp Feature: domain Description: PRK13875 Location: 201663-203046 bp Feature: domain Description: PRK13875 Location: 2 01663-2 03046 bp Feature: gene Location: 203057-205348 bp Feature: gene Location: 203690-205216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203993-204710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 03993-2 04710 bp Feature: domain Description: GIIM Note: maturase Location: 204788-205022 bp Feature: domain Description: GIIM Note: maturase Location: 2 04788-2 0502 2 bp Feature: gene Location: 205345-205632 bp Feature: domain Description: other_trbK Location: 205366-205585 bp Feature: domain Description: other_trbK Location: 2 05366-2 05585 bp Feature: gene Location: 205647-206393 bp Feature: domain Description: PRK13874 Location: 205686-206349 bp Feature: domain Description: PRK13874 Location: 2 05686-2 06349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13875 (conjugal transfer protein TrbL; Provisional), RVT-GII, GIIM (pfam08388), other_trbK (TIGR04360), PRK13874 (conjugal transfer protein TrbJ; Provisional)