myRT

myRT report for GCA_009744115.1_ASM974411v1

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Seq: WPHP01000063.1 Agrobacterium vitis strain CG957 CG957_63, whole genome shotgun sequence (12536 bp)
Overview 1 RT 1: 3-4395 bp Neighborhood of RT #1 [3, 4406] RVT-GII PRK06522 Octopine_DH PRK10261 Feature: gene Location: 3-152 bp Feature: gene Location: 170-298 bp Feature: gene Location: 513-1268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 720-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 720-1 227 bp Feature: gene Location: 1305-2354 bp Feature: domain Description: PRK06522 Location: 1308-1605 bp Feature: domain Description: PRK06522 Location: 1 308-1 605 bp Feature: domain Description: Octopine_DH Location: 1845-2271 bp Feature: domain Description: Octopine_DH Location: 1 845-2271 bp Feature: gene Location: 2553-4406 bp Feature: domain Description: PRK10261 Location: 2598-4395 bp Feature: domain Description: PRK1 0261 Location: 2598-4395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06522 (2-dehydropantoate 2-reductase; Reviewed), Octopine_DH (pfam02317), PRK10261 (glutathione transporter ATP-binding protein; Provisional), RVT-GII

Seq: WPHP01000070.1 Agrobacterium vitis strain CG957 CG957_70, whole genome shotgun sequence (7973 bp)
Overview 1 RT 1: 1655-4259 bp Neighborhood of RT #1 [1655, 4259] Dimer_Tnp_Tn5 HTH_Tnp_1 TnpB_IS66 RVT-GII GIIM DDE_Tnp_1_2 Feature: gene Location: 1655-2068 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1772-2042 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1772 -2 042 bp Feature: gene Location: 2157-2579 bp Feature: domain Description: HTH_Tnp_1 Location: 2217-2376 bp Feature: domain Description: HTH_Tnp_1 Location: 2 2 17-2 376 bp Feature: gene Location: 2582-3502 bp Feature: domain Description: TnpB_IS66 Location: 2615-2867 bp Feature: domain Description: TnpB_IS66 Location: 2 615-2 867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2996-3125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 996-312 5 bp Feature: domain Description: GIIM Note: maturase Location: 3197-3404 bp Feature: domain Description: GIIM Note: maturase Location: 3197-3404 bp Feature: gene Location: 3645-4004 bp Feature: domain Description: DDE_Tnp_1_2 Location: 3819-3978 bp Feature: domain Description: DDE_Tnp_1_2 Location: 3819-3978 bp Feature: gene Location: 4014-4259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dimer_Tnp_Tn5 (pfam02281), HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_2 (pfam13586)

Seq: WPHP01000071.1 Agrobacterium vitis strain CG957 CG957_71, whole genome shotgun sequence (7069 bp)
Overview 1 RT 1: 4330-6994 bp Neighborhood of RT #1 [4330, 6996] RVT_N RVT-GII YkfC COG5489 Feature: gene Location: 4330-4470 bp Feature: gene Location: 4726-5049 bp Feature: RT Description: RVT_N Location: 4777-5005 bp Feature: RT Description: RVT_N Location: 4777-5005 bp Feature: gene Location: 5109-6266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5112-5703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5112-5703 bp Feature: domain Description: YkfC Location: 5835-6057 bp Feature: domain Description: YkfC Location: 583 5-6057 bp Feature: gene Location: 6502-6996 bp Feature: domain Description: COG5489 Location: 6682-6994 bp Feature: domain Description: COG5489 Location: 6682-6994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), COG5489 (Uncharacterized conserved protein, DUF736 family )