myRT

myRT report for GCA_009744125.1_ASM974412v1

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Seq: WPHS01000011.1 Agrobacterium vitis strain CG475 CG475_11, whole genome shotgun sequence (171550 bp)
Overview 1 RT 1: 76380-78992 bp Neighborhood of RT #1 [76380, 78992] InsE RVT-GII RVT-GII GIIM Feature: gene Location: 76380-76616 bp Feature: domain Description: InsE Location: 76383-76584 bp Feature: domain Description: InsE Location: 76383-76584 bp Feature: gene Location: 76711-77031 bp Feature: gene Location: 77131-77460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77239-77344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77239-77344 bp Feature: gene Location: 77663-78247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77675-77873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77675-77873 bp Feature: domain Description: GIIM Note: maturase Location: 77960-78146 bp Feature: domain Description: GIIM Note: maturase Location: 77960-781 46 bp Feature: gene Location: 78313-78546 bp Feature: gene Location: 78627-78992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: WPHS01000002.1 Agrobacterium vitis strain CG475 CG475_2, whole genome shotgun sequence (574368 bp)
Overview 1 RT 1: 1-4602 bp Neighborhood of RT #1 [1, 4649] RVT-UG7 Tar Tar Feature: gene Location: 1-147 bp Feature: gene Location: 359-1987 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 800-1193 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 800-1193 bp Feature: gene Location: 1977-2729 bp Feature: gene Location: 2832-4649 bp Feature: domain Description: Tar Location: 3219-3624 bp Feature: domain Description: Tar Location: 32 19-362 4 bp Feature: domain Description: Tar Location: 3678-4602 bp Feature: domain Description: Tar Location: 3678-4602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, Tar (COG0840)

Seq: WPHS01000020.1 Agrobacterium vitis strain CG475 CG475_20, whole genome shotgun sequence (71563 bp)
Overview 1 RT 1: 3-1908 bp Neighborhood of RT #1 [3, 1908] RVT-GII YkfC COG5489 Feature: gene Location: 3-1085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-522 bp Feature: domain Description: YkfC Location: 654-876 bp Feature: domain Description: YkfC Location: 654-876 bp Feature: gene Location: 1321-1632 bp Feature: domain Description: COG5489 Location: 1324-1630 bp Feature: domain Description: COG5489 Location: 13 24-163 0 bp Feature: gene Location: 1735-1908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), COG5489 (Uncharacterized conserved protein, DUF736 family )

Seq: WPHS01000044.1 Agrobacterium vitis strain CG475 CG475_44, whole genome shotgun sequence (1209 bp)
Overview 1 RT 1: 230-1208 bp Neighborhood of RT #1 [230, 1207] RVT_N RVT-GII Feature: gene Location: 230-370 bp Feature: gene Location: 626-1207 bp Feature: domain Description: RVT_N Location: 677-905 bp Feature: domain Description: RVT_N Location: 677-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 965-1208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 965-1208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII