myRT

myRT report for GCA_009744135.1_ASM974413v1

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Seq: WPHR01000029.1 Agrobacterium vitis strain CG516 CG516_29, whole genome shotgun sequence (71225 bp)
Overview 1 RT 1: 23755-27638 bp Neighborhood of RT #1 [23755, 27658] COG3547 RVT-GII GIIM DDE_3 HpaA Feature: gene Location: 23755-24306 bp Feature: domain Description: COG3547 Location: 23770-24268 bp Feature: domain Description: COG3547 Location: 23770-24268 bp Feature: gene Location: 24656-25015 bp Feature: gene Location: 24990-26249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25206-25860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25206-25860 bp Feature: domain Description: GIIM Note: maturase Location: 25941-26163 bp Feature: domain Description: GIIM Note: maturase Location: 25941 -261 63 bp Feature: gene Location: 26453-26758 bp Feature: domain Description: DDE_3 Location: 26462-26630 bp Feature: domain Description: DDE_3 Location: 26462-26630 bp Feature: gene Location: 26771-27658 bp Feature: domain Description: HpaA Location: 26888-27638 bp Feature: domain Description: HpaA Location: 26888-27638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), HpaA (TIGR02297)

Seq: WPHR01000052.1 Agrobacterium vitis strain CG516 CG516_52, whole genome shotgun sequence (15894 bp)
Overview 1 RT 1: 5203-8268 bp Neighborhood of RT #1 [5203, 8268] VOC_like RVT-GII Feature: gene Location: 5203-5559 bp Feature: domain Description: VOC_like Location: 5218-5548 bp Feature: domain Description: VOC_like Location: 52 18-5548 bp Feature: gene Location: 5725-6195 bp Feature: gene Location: 6033-7262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6444-7134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6444-7134 bp Feature: gene Location: 7315-7512 bp Feature: gene Location: 7660-8268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC_like (cd16355), RVT-GII

Seq: WPHR01000053.1 Agrobacterium vitis strain CG516 CG516_53, whole genome shotgun sequence (15589 bp)
Overview 1 RT 1: 13848-15501 bp Neighborhood of RT #1 [13848, 15587] DUF1403 Rve RVT-GII GIIM Feature: gene Location: 13848-14195 bp Feature: domain Description: DUF1403 Location: 13905-14088 bp Feature: domain Description: DUF1403 Location: 13 905-14088 bp Feature: gene Location: 14317-14616 bp Feature: domain Description: Rve Location: 14344-14593 bp Feature: domain Description: Rve Location: 143 44-14593 bp Feature: gene Location: 14655-15587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14658-15189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14658-15189 bp Feature: domain Description: GIIM Note: maturase Location: 15267-15501 bp Feature: domain Description: GIIM Note: maturase Location: 15267-15501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1403 (pfam07183), Rve (COG3316), RVT-GII, GIIM (pfam08388)

Seq: WPHR01000078.1 Agrobacterium vitis strain CG516 CG516_78, whole genome shotgun sequence (991 bp)
Overview 1 RT 1: 3-738 bp Neighborhood of RT #1 [3, 738] RVT-GII Feature: gene Location: 3-452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207-447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207-4 4 7 bp Feature: gene Location: 562-738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII