myRT

myRT report for GCA_009761395.1_ASM976139v1

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Seq: LEKN01000006.1 Ursidibacter maritimus strain Pb43106 contig_15_1, whole genome shotgun sequence (550 bp)
Overview 1 RT 1: 3-522 bp Neighborhood of RT #1 [3, 548] RVT_N RVT-GII Feature: gene Location: 3-548 bp Feature: RT Description: RVT_N Location: 39-282 bp Feature: RT Description: RVT_N Location: 39-282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: LEKN01000007.1 Ursidibacter maritimus strain Pb43106 contig_15_2, whole genome shotgun sequence (1127 bp)
Overview 1 RT 1: 1-1000 bp Neighborhood of RT #1 [1, 1044] RVT-GII GIIM HNHc Feature: gene Location: 1-1044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13-331 bp Feature: domain Description: GIIM Note: maturase Location: 382-616 bp Feature: domain Description: GIIM Note: maturase Location: 382 -616 bp Feature: domain Description: HNHc Note: nucleases Location: 844-1000 bp Feature: domain Description: HNHc Note: nucleases Location: 844-1000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LEKN01000013.1 Ursidibacter maritimus strain Pb43106 contig_1_2, whole genome shotgun sequence (479842 bp)
Overview 1 RT 1: 392480-401671 bp Neighborhood of RT #1 [392480, 401673] valS RVT-Retrons yhaH pepN Feature: gene Location: 392480-394045 bp Feature: gene Location: 394099-396963 bp Feature: domain Description: valS Location: 394114-396955 bp Feature: domain Description: valS Location: 3 94114-3 96955 bp Feature: gene Location: 396987-398150 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 397020-397554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 97020-3 97554 bp Feature: gene Location: 398648-399064 bp Feature: domain Description: yhaH Location: 398657-399050 bp Feature: domain Description: yhaH Location: 3 98657-3 99050 bp Feature: gene Location: 399064-401673 bp Feature: domain Description: pepN Location: 399070-401671 bp Feature: domain Description: pepN Location: 3 99070-401671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT valS (TIGR00422), RVT-Retrons, yhaH (COG3152), pepN (PRK14015)

Seq: LEKN01000036.1 Ursidibacter maritimus strain Pb43106 contig_6_1, whole genome shotgun sequence (113068 bp)
Overview 1 RT 1: 1168-5986 bp Neighborhood of RT #1 [1168, 6060] RVT_N RVT-GII GIIM HNHc Sulf_transp SseA SseA Feature: gene Location: 1168-1545 bp Feature: gene Location: 1671-3395 bp Feature: RT Description: RVT_N Location: 1746-1989 bp Feature: RT Description: RVT_N Location: 174 6-1989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034-2688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034 -2688 bp Feature: domain Description: GIIM Note: maturase Location: 2742-2973 bp Feature: domain Description: GIIM Note: maturase Location: 274 2-2973 bp Feature: domain Description: HNHc Note: nucleases Location: 3198-3357 bp Feature: domain Description: HNHc Note: nucleases Location: 3198-3357 bp Feature: gene Location: 3667-4668 bp Feature: domain Description: Sulf_transp Location: 3718-4636 bp Feature: domain Description: Sulf_transp Location: 3718-4 636 bp Feature: gene Location: 4678-6060 bp Feature: domain Description: SseA Location: 4765-4990 bp Feature: domain Description: SseA Location: 4 765-4 990 bp Feature: domain Description: SseA Location: 5116-5986 bp Feature: domain Description: SseA Location: 5116-5986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Sulf_transp (pfam04143), SseA (COG2897)