myRT

myRT report for GCA_009765325.1_ASM976532v1

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Seq: VSJI01000100.1 Klebsiella pneumoniae strain EN5339 NODE_100_len_2343_cov_31.6548_pilon_SHARMI-1096, whole genome shotgun sequence (2343 bp)
Overview 1 RT 1: 82-2211 bp Neighborhood of RT #1 [82, 2211] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 82-1749 bp Feature: domain Description: RVT_N Location: 130-367 bp Feature: domain Description: RVT_N Location: 1 30-367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 8-1 060 bp Feature: domain Description: GIIM Note: maturase Location: 1111-1345 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 1 -1 345 bp Feature: domain Description: HNHc Note: nucleases Location: 1555-1714 bp Feature: domain Description: HNHc Note: nucleases Location: 1 555-1 71 4 bp Feature: gene Location: 2029-2211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VSJI01000104.1 Klebsiella pneumoniae strain EN5339 NODE_104_len_1892_cov_98.8193_pilon_SHARMI-1096, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 59-1891 bp Neighborhood of RT #1 [59, 1891] RVT-GII Feature: gene Location: 59-1546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: gene Location: 1700-1891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSJI01000022.1 Klebsiella pneumoniae strain EN5339 NODE_22_len_73567_cov_16.0204_pilon_SHARMI-1096, whole genome shotgun sequence (73567 bp)
Overview 1 RT 1: 31991-38844 bp Neighborhood of RT #1 [31991, 38861] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31991-32656 bp Feature: domain Description: INT_P4_C Location: 32096-32654 bp Feature: domain Description: INT_P4_C Location: 3 2096-3 2654 bp Feature: gene Location: 32917-33357 bp Feature: domain Description: Integrase_1 Location: 32923-33139 bp Feature: domain Description: Integrase_1 Location: 3 2923 -3 3 13 9 bp Feature: gene Location: 33414-35492 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33822-34266 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 3 822-3 4266 bp Feature: gene Location: 35492-38101 bp Feature: domain Description: FimD Location: 35549-38090 bp Feature: domain Description: FimD Location: 3 5549-3 8090 bp Feature: gene Location: 38133-38861 bp Feature: domain Description: FimC Location: 38181-38844 bp Feature: domain Description: FimC Location: 3 8181-3 8844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)