myRT

myRT report for GCA_009765875.1_ASM976587v1

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Seq: LMUP01000009.1 Pedobacter sp. L105 NODE_10_length_664521_cov_9.132494, whole genome shotgun sequence (664607 bp)
Overview 1 RT 1: 1141-6583 bp Neighborhood of RT #1 [1141, 6786] LZ_Tnp_IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM HNHc DDE_Tnp_IS66 AAA_21 Feature: gene Location: 1141-1956 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1252-1438 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 252-1 438 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1681-1939 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 681 -1 939 bp Feature: gene Location: 2190-2483 bp Feature: gene Location: 2688-4406 bp Feature: RT Description: RVT_N Location: 2742-2985 bp Feature: RT Description: RVT_N Location: 2742-2985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3030-3690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3030-3690 bp Feature: domain Description: GIIM Note: maturase Location: 3759-3990 bp Feature: domain Description: GIIM Note: maturase Location: 3759-3990 bp Feature: domain Description: HNHc Note: nucleases Location: 4212-4356 bp Feature: domain Description: HNHc Note: nucleases Location: 421 2-4356 bp Feature: gene Location: 4551-5036 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4554-4941 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4554-4941 bp Feature: gene Location: 5488-6786 bp Feature: domain Description: AAA_21 Location: 5626-6583 bp Feature: domain Description: AAA_21 Location: 5626-6583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AAA_21 (pfam13304)

Seq: LMUP01000004.1 Pedobacter sp. L105 NODE_4_length_1450250_cov_9.183602, whole genome shotgun sequence (1450336 bp)
Overview 1 RT 1: 298405-302243 bp Neighborhood of RT #1 [298405, 302257] rve_2 RVT_N RVT-GII YkfC PHA02517 InsE Feature: gene Location: 298405-298572 bp Feature: gene Location: 298682-298939 bp Feature: domain Description: rve_2 Location: 298766-298904 bp Feature: domain Description: rve_2 Location: 2 98766-2 98904 bp Feature: gene Location: 298932-300644 bp Feature: RT Description: RVT_N Location: 298983-299226 bp Feature: RT Description: RVT_N Location: 2 98983-2 992 2 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299271-299901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 992 71-2 99901 bp Feature: domain Description: YkfC Location: 300048-300390 bp Feature: domain Description: YkfC Location: 300048-300390 bp Feature: gene Location: 301185-301910 bp Feature: domain Description: PHA02517 Location: 301200-301839 bp Feature: domain Description: PHA02 517 Location: 3012 00-301839 bp Feature: gene Location: 301943-302257 bp Feature: domain Description: InsE Location: 301952-302243 bp Feature: domain Description: InsE Location: 301952 -302 2 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)