myRT

myRT report for GCA_009765935.1_ASM976593v1

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Seq: LMUN01000089.1 Burkholderia sp. S1 NODE_137_length_405535_cov_8.682415, whole genome shotgun sequence (405619 bp)
Overview 1 RT 1: 241667-245353 bp Neighborhood of RT #1 [241667, 245358] PRK07883 PRK10545 RVT-GII GIIM CspC Feature: gene Location: 241667-242821 bp Feature: domain Description: PRK07883 Location: 241697-242546 bp Feature: domain Description: PRK07883 Location: 241 697-242546 bp Feature: domain Description: PRK10545 Location: 242567-242765 bp Feature: domain Description: PRK1 0545 Location: 242567-242765 bp Feature: gene Location: 242860-243090 bp Feature: gene Location: 243165-244115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243399-243672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243399-243672 bp Feature: domain Description: GIIM Note: maturase Location: 243720-243945 bp Feature: domain Description: GIIM Note: maturase Location: 243720-243945 bp Feature: gene Location: 244148-244474 bp Feature: gene Location: 245155-245358 bp Feature: domain Description: CspC Location: 245158-245353 bp Feature: domain Description: CspC Location: 2451 58-245353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07883 (DEDD exonuclease domain-containing protein), PRK10545 (excinuclease Cho), RVT-GII, GIIM (pfam08388), CspC (COG1278)

Seq: LMUN01000093.1 Burkholderia sp. S1 NODE_150_length_351420_cov_8.772427, whole genome shotgun sequence (351504 bp)
Overview 1 RT 1: 121820-125410 bp Neighborhood of RT #1 [121820, 125410] RVT-GII GIIM IS5 Feature: gene Location: 121820-122155 bp Feature: gene Location: 122258-122515 bp Feature: gene Location: 122687-123304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122732-122837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 732 -12 2 837 bp Feature: domain Description: GIIM Note: maturase Location: 122888-123122 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 888-12 312 2 bp Feature: gene Location: 123305-123865 bp Feature: domain Description: IS5 Location: 123410-123833 bp Feature: domain Description: IS5 Location: 12 3410-12 3833 bp Feature: gene Location: 124223-125410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IS5 (COG3039)

Seq: LMUN01000103.1 Burkholderia sp. S1 NODE_164_length_170839_cov_8.725601, whole genome shotgun sequence (170923 bp)
Overview 1 RT 1: 102413-109865 bp Neighborhood of RT #1 [102413, 109865] COG4913 COG4924 RVT-Retrons Feature: gene Location: 102413-105787 bp Feature: domain Description: COG4913 Location: 102437-105773 bp Feature: domain Description: COG4913 Location: 10243 7-105773 bp Feature: gene Location: 105784-106959 bp Feature: domain Description: COG4924 Location: 105793-106954 bp Feature: domain Description: COG4924 Location: 105793 -106954 bp Feature: gene Location: 107372-108715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107840-108476 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107840-108476 bp Feature: gene Location: 108789-109457 bp Feature: gene Location: 109536-109865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4913 (Uncharacterized protein, contains a C-terminal ATPase domain ), COG4924 (Uncharacterized protein ), RVT-Retrons

Seq: LMUN01000108.1 Burkholderia sp. S1 NODE_172_length_154059_cov_8.969648, whole genome shotgun sequence (154143 bp)
Overview 1 RT 1: 22046-26647 bp Neighborhood of RT #1 [22046, 26670] INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII GIIM HTH_HMRTR Feature: gene Location: 22046-22981 bp Feature: domain Description: INT_RitB_C_like Location: 22355-22946 bp Feature: domain Description: INT_RitB_C_like Location: 22355-2294 6 bp Feature: gene Location: 22978-24225 bp Feature: domain Description: Phage_int_SAM_1 Location: 23347-23581 bp Feature: domain Description: Phage_int_SAM_1 Location: 2334 7-23581 bp Feature: domain Description: INT_RitA_C_like Location: 23674-24199 bp Feature: domain Description: INT_RitA_C_like Location: 23674 -24 199 bp Feature: gene Location: 24392-25717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24683-25346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 683-2534 6 bp Feature: domain Description: GIIM Note: maturase Location: 25418-25631 bp Feature: domain Description: GIIM Note: maturase Location: 254 18-25631 bp Feature: gene Location: 25914-26264 bp Feature: gene Location: 26296-26670 bp Feature: domain Description: HTH_HMRTR Location: 26299-26647 bp Feature: domain Description: HTH_HMRTR Location: 26299-2664 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), HTH_HMRTR (cd04770)

Seq: LMUN01000054.1 Burkholderia sp. S1 NODE_77_length_9842_cov_8.688986, whole genome shotgun sequence (9926 bp)
Overview 1 RT 1: 4748-9494 bp Neighborhood of RT #1 [4748, 9494] COG5361 BaeS RVT-GII GIIM Feature: gene Location: 4748-6298 bp Feature: domain Description: COG5361 Location: 4898-6293 bp Feature: domain Description: COG5 361 Location: 4898-6293 bp Feature: gene Location: 6596-7642 bp Feature: domain Description: BaeS Location: 6884-7586 bp Feature: domain Description: BaeS Location: 6884-75 86 bp Feature: gene Location: 7908-9245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8265-8880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8265 -8880 bp Feature: domain Description: GIIM Note: maturase Location: 8931-9144 bp Feature: domain Description: GIIM Note: maturase Location: 8931-9144 bp Feature: gene Location: 9342-9494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5361 (Uncharacterized conserved protein ), BaeS (COG0642), RVT-GII, GIIM (pfam08388)

Seq: LMUN01000060.1 Burkholderia sp. S1 NODE_85_length_126673_cov_8.870872, whole genome shotgun sequence (126757 bp)
Overview 1 RT 1: 79528-86945 bp Neighborhood of RT #1 [79528, 87121] Phage_int_SAM_4 INT_IntI_C RVT-UG5 pfam13191 MPP_1 Feature: gene Location: 79528-80451 bp Feature: domain Description: Phage_int_SAM_4 Location: 79585-79831 bp Feature: domain Description: Phage_int_SAM_4 Location: 79585-79831 bp Feature: domain Description: INT_IntI_C Location: 79867-80356 bp Feature: domain Description: INT_IntI_C Location: 7986 7-80356 bp Feature: gene Location: 81113-81364 bp Feature: gene Location: 81446-84454 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 81965-82415 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8196 5-82415 bp Feature: gene Location: 84583-84774 bp Feature: gene Location: 84923-87121 bp Feature: domain Description: pfam13191 Location: 84992-85430 bp Feature: domain Description: pfam13191 Location: 84992-85430 bp Feature: domain Description: MPP_1 Location: 86156-86945 bp Feature: domain Description: MPP_1 Location: 86 156 -86 945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT-UG5, pfam13191 (AAA_16;AAA ATPase domain), MPP_1 (cd07400)