myRT

myRT report for GCA_009765975.1_ASM976597v1

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Seq: LMUJ01000083.1 Acidisphaera sp. S103 NODE_124_length_120271_cov_8.640453, whole genome shotgun sequence (120367 bp)
Overview 1 RT 1: 38510-42844 bp Neighborhood of RT #1 [38510, 42844] RVT-GII Feature: gene Location: 38510-38707 bp Feature: gene Location: 38756-39025 bp Feature: gene Location: 39235-40557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39490-40180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39490-401 80 bp Feature: gene Location: 40672-41331 bp Feature: gene Location: 41420-42844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LMUJ01000009.1 Acidisphaera sp. S103 NODE_14_length_41897_cov_8.793923, whole genome shotgun sequence (41993 bp)
Overview 1 RT 1: 36649-41923 bp Neighborhood of RT #1 [36649, 41991] PEP-CTERM MarR Acetyltransf_1 RVT-GII GIIM GT4_WavL-like Feature: gene Location: 36649-37158 bp Feature: domain Description: PEP-CTERM Location: 37069-37138 bp Feature: domain Description: PEP-CTERM Location: 37069-37138 bp Feature: gene Location: 37192-38169 bp Feature: domain Description: MarR Location: 37276-37669 bp Feature: domain Description: MarR Location: 372 76-37669 bp Feature: domain Description: Acetyltransf_1 Location: 37789-38095 bp Feature: domain Description: Acetyltransf_1 Location: 37789-38095 bp Feature: gene Location: 38525-39880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38813-39515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38813-39515 bp Feature: domain Description: GIIM Note: maturase Location: 39584-39788 bp Feature: domain Description: GIIM Note: maturase Location: 39584-39788 bp Feature: gene Location: 40843-41991 bp Feature: domain Description: GT4_WavL-like Location: 40870-41923 bp Feature: domain Description: GT4_WavL-like Location: 40870-4192 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP-CTERM, MarR (pfam01047), Acetyltransf_1 (pfam00583), RVT-GII, GIIM (pfam08388), GT4_WavL-like (cd03819)

Seq: LMUJ01000012.1 Acidisphaera sp. S103 NODE_17_length_40474_cov_8.366087, whole genome shotgun sequence (40570 bp)
Overview 1 RT 1: 34663-40569 bp Neighborhood of RT #1 [34663, 40569] AbiEii RVT-Retrons Trypsin_2 RVT-G2L4 Feature: gene Location: 34663-35619 bp Feature: domain Description: AbiEii Location: 34801-35563 bp Feature: domain Description: AbiEii Location: 3 4801-3 5563 bp Feature: gene Location: 35609-36010 bp Feature: gene Location: 36279-37862 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36438-37035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 643 8-3 703 5 bp Feature: domain Description: Trypsin_2 Location: 37380-37782 bp Feature: domain Description: Trypsin_2 Location: 3 73 80-3 7782 bp Feature: gene Location: 38137-38322 bp Feature: gene Location: 38442-38639 bp Feature: gene Location: 38740-40152 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 39094-39691 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 3 9094-3 9691 bp Feature: gene Location: 39847-40569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), RVT-Retrons, Trypsin_2 (pfam13365), RVT-G2L4

Seq: LMUJ01000111.1 Acidisphaera sp. S103 NODE_190_length_358756_cov_8.576791, whole genome shotgun sequence (358852 bp)
Overview 1 RT 1: 271135-273538 bp Neighborhood of RT #1 [271135, 273666] AAA_16 RVT-GII nitrilases_CHs Feature: gene Location: 271135-271446 bp Feature: domain Description: AAA_16 Location: 271150-271336 bp Feature: domain Description: AAA_16 Location: 271150-271336 bp Feature: gene Location: 271594-271746 bp Feature: gene Location: 271756-272502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271966-272131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271966-272131 bp Feature: gene Location: 272499-273167 bp Feature: gene Location: 273190-273666 bp Feature: domain Description: nitrilases_CHs Location: 273193-273538 bp Feature: domain Description: nitrilases_CHs Location: 273193-273538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_16 (pfam13191), RVT-GII, nitrilases_CHs (cd07564)

Seq: LMUJ01000063.1 Acidisphaera sp. S103 NODE_197_length_335035_cov_8.707147, whole genome shotgun sequence (335131 bp)
Overview 1 RT 1: 32869-42205 bp 2 RT 2: 50469-57972 bp Neighborhood of RT #1 [32869, 42210] QdoI Amidohydro_2 RVT-GII GIIM GMP_PMI Neighborhood of RT #2 [50469, 58004] PRK03573 RVT-Retrons Trypsin_2 Amidohydro_2 Amidohydro_2 Feature: gene Location: 32869-33246 bp Feature: domain Description: QdoI Location: 32896-33223 bp Feature: domain Description: QdoI Location: 32896-33223 bp Feature: gene Location: 33428-34894 bp Feature: domain Description: Amidohydro_2 Location: 33656-34352 bp Feature: domain Description: Amidohydro_2 Location: 3365 6-3435 2 bp Feature: gene Location: 35538-36758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35781-36405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 781-36405 bp Feature: domain Description: GIIM Note: maturase Location: 36453-36660 bp Feature: domain Description: GIIM Note: maturase Location: 3645 3-36660 bp Feature: gene Location: 36964-39834 bp Feature: gene Location: 40246-42210 bp Feature: domain Description: GMP_PMI Location: 40804-42205 bp Feature: domain Description: GMP_PMI Location: 40804-42205 bp Feature: gene Location: 50469-50924 bp Feature: domain Description: PRK03573 Location: 50502-50913 bp Feature: domain Description: PRK035 73 Location: 5 05 02-5 0913 bp Feature: gene Location: 51147-52094 bp Feature: gene Location: 52654-54324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52804-53410 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 2804-5 3410 bp Feature: domain Description: Trypsin_2 Location: 53815-54232 bp Feature: domain Description: Trypsin_2 Location: 5 3815 -5 4232 bp Feature: gene Location: 55780-56907 bp Feature: domain Description: Amidohydro_2 Location: 55849-56899 bp Feature: domain Description: Amidohydro_2 Location: 5 5 849-5 6899 bp Feature: gene Location: 56904-58004 bp Feature: domain Description: Amidohydro_2 Location: 56955-57972 bp Feature: domain Description: Amidohydro_2 Location: 5 695 5 -5 7972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QdoI (COG1917), Amidohydro_2 (pfam04909), RVT-GII, GIIM (pfam08388), GMP_PMI (TIGR01479), PRK03573 (transcriptional regulator SlyA; Provisional), RVT-Retrons, Trypsin_2 (pfam13365)

Seq: LMUJ01000001.1 Acidisphaera sp. S103 NODE_1_length_3563_cov_10.186359, whole genome shotgun sequence (3659 bp)
Overview 1 RT 1: 1127-3010 bp Neighborhood of RT #1 [1127, 3096] YhhI RVT-GII GIIM Feature: gene Location: 1127-1375 bp Feature: gene Location: 1557-1790 bp Feature: domain Description: YhhI Location: 1581-1707 bp Feature: domain Description: YhhI Location: 1581-1707 bp Feature: gene Location: 1843-3096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2050-2704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2050-2704 bp Feature: domain Description: GIIM Note: maturase Location: 2791-3010 bp Feature: domain Description: GIIM Note: maturase Location: 2791-3010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: LMUJ01000033.1 Acidisphaera sp. S103 NODE_50_length_62278_cov_8.388933, whole genome shotgun sequence (62374 bp)
Overview 1 RT 1: 59005-62373 bp Neighborhood of RT #1 [59005, 62373] HTH_33 DDE_3 RVT-GII GIIM Feature: gene Location: 59005-59502 bp Feature: domain Description: HTH_33 Location: 59230-59401 bp Feature: domain Description: HTH_33 Location: 59230-59401 bp Feature: gene Location: 59583-59975 bp Feature: domain Description: DDE_3 Location: 59628-59874 bp Feature: domain Description: DDE_3 Location: 59628-5987 4 bp Feature: gene Location: 60564-61856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60852-61509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60852-61509 bp Feature: domain Description: GIIM Note: maturase Location: 61578-61791 bp Feature: domain Description: GIIM Note: maturase Location: 6157 8-617 91 bp Feature: gene Location: 62032-62373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388)

Seq: LMUJ01000042.1 Acidisphaera sp. S103 NODE_61_length_332550_cov_8.678854, whole genome shotgun sequence (332646 bp)
Overview 1 RT 1: 323346-328314 bp Neighborhood of RT #1 [323346, 328314] MBLAC1-like_MBL-fold PRK00870 RVT-Retrons 3MGA_Dioxygenase Feature: gene Location: 323346-324101 bp Feature: domain Description: MBLAC1-like_MBL-fold Location: 323370-323991 bp Feature: domain Description: MBLAC1-like_MBL-fold Location: 323370-323991 bp Feature: gene Location: 324201-325115 bp Feature: domain Description: PRK00870 Location: 324216-325098 bp Feature: domain Description: PRK008 70 Location: 324216-325098 bp Feature: gene Location: 325198-326499 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325642-326260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325642-326260 bp Feature: gene Location: 326945-327934 bp Feature: domain Description: 3MGA_Dioxygenase Location: 326951-327929 bp Feature: domain Description: 3MGA_Dioxygenase Location: 326951-327929 bp Feature: gene Location: 328063-328314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MBLAC1-like_MBL-fold (cd07711), PRK00870 (haloalkane dehalogenase; Provisional), RVT-Retrons, 3MGA_Dioxygenase (cd07366)

Seq: LMUJ01000054.1 Acidisphaera sp. S103 NODE_78_length_388832_cov_8.703312, whole genome shotgun sequence (388928 bp)
Overview 1 RT 1: 285092-289578 bp Neighborhood of RT #1 [285092, 289592] RVT-GII GIIM KOG2621 PRK08190 Feature: gene Location: 285092-285307 bp Feature: gene Location: 285317-285514 bp Feature: gene Location: 285680-286951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285911-286571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2859 11-286571 bp Feature: domain Description: GIIM Note: maturase Location: 286652-286877 bp Feature: domain Description: GIIM Note: maturase Location: 286652-286877 bp Feature: gene Location: 287563-288396 bp Feature: domain Description: KOG2621 Location: 287599-288319 bp Feature: domain Description: KOG2621 Location: 28759 9 -288319 bp Feature: gene Location: 288690-289592 bp Feature: domain Description: PRK08190 Location: 288693-289578 bp Feature: domain Description: PRK0819 0 Location: 28869 3-289 578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG2621 (KOG2621, Prohibitins and stomatins of the PID superfamily ), PRK08190 (bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated)