myRT

myRT report for GCA_009767885.1_ASM976788v1

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Seq: WSRQ01000140.1 Clostridium chromiireducens strain NM79_F5 NODE_140_length_2700_cov_98.6805, whole genome shotgun sequence (2700 bp)
Overview 1 RT 1: 722-1736 bp Neighborhood of RT #1 [722, 2587] RVT-GII Feature: gene Location: 722-2587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1055-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 055-1 736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WSRQ01000021.1 Clostridium chromiireducens strain NM79_F5 NODE_21_length_82116_cov_33.0088, whole genome shotgun sequence (82116 bp)
Overview 1 RT 1: 31131-38823 bp Neighborhood of RT #1 [31131, 38823] RVT-Retrons RVT-Retrons COG3963 Feature: gene Location: 31131-34130 bp Feature: gene Location: 34120-35940 bp Feature: gene Location: 35937-37496 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36573-36747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36573-36747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36825-37263 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3682 5-372 63 bp Feature: gene Location: 37999-38580 bp Feature: domain Description: COG3963 Location: 38032-38575 bp Feature: domain Description: COG3963 Location: 38032 -38575 bp Feature: gene Location: 38617-38823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3963 (Phospholipid N-methyltransferase )

Seq: WSRQ01000022.1 Clostridium chromiireducens strain NM79_F5 NODE_22_length_81540_cov_23.5483, whole genome shotgun sequence (81540 bp)
Overview 1 RT 1: 42336-46391 bp Neighborhood of RT #1 [42336, 46522] COG5263 Endonuclea_NS_2 RVT-GII GIIM PulE Feature: gene Location: 42336-42515 bp Feature: gene Location: 42826-43878 bp Feature: domain Description: COG5263 Location: 42925-43099 bp Feature: domain Description: COG5263 Location: 42925-43 099 bp Feature: domain Description: Endonuclea_NS_2 Location: 43213-43492 bp Feature: domain Description: Endonuclea_NS_2 Location: 43 213 -43 492 bp Feature: gene Location: 44207-44995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44372-44990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443 72-44990 bp Feature: gene Location: 45095-45430 bp Feature: domain Description: GIIM Note: maturase Location: 45101-45266 bp Feature: domain Description: GIIM Note: maturase Location: 45101-45266 bp Feature: gene Location: 45806-46522 bp Feature: domain Description: PulE Location: 45812-46391 bp Feature: domain Description: PulE Location: 45812-463 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5263 (Glucan-binding domain (YG repeat) ), Endonuclea_NS_2 (pfam13930), RVT-GII, GIIM (pfam08388), PulE (COG2804)

Seq: WSRQ01000031.1 Clostridium chromiireducens strain NM79_F5 NODE_31_length_63171_cov_36.6832, whole genome shotgun sequence (63171 bp)
Overview 1 RT 1: 4905-12595 bp Neighborhood of RT #1 [4905, 12612] DegV PRK07111 PRK07111 RVT-GII HNHc PRK07111 aksA Feature: gene Location: 4905-5753 bp Feature: domain Description: DegV Location: 4917-5736 bp Feature: domain Description: DegV Location: 4 917-5736 bp Feature: gene Location: 6110-6961 bp Feature: domain Description: PRK07111 Location: 6113-6836 bp Feature: domain Description: PRK07111 Location: 6113-6836 bp Feature: domain Description: PRK07111 Location: 6854-6950 bp Feature: domain Description: PRK07111 Location: 6854 -6950 bp Feature: gene Location: 7727-9613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8048-8777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804 8-8777 bp Feature: domain Description: HNHc Note: nucleases Location: 9320-9455 bp Feature: domain Description: HNHc Note: nucleases Location: 9320-94 55 bp Feature: gene Location: 9969-11009 bp Feature: domain Description: PRK07111 Location: 9972-10983 bp Feature: domain Description: PRK07111 Location: 9972-10983 bp Feature: gene Location: 11446-12612 bp Feature: domain Description: aksA Location: 11473-12595 bp Feature: domain Description: aksA Location: 114 73-12595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT aksA (PRK11858), DegV (TIGR00762), PRK07111 (anaerobic ribonucleoside triphosphate reductase; Provisional), RVT-GII, HNHc (smart00507)

Seq: WSRQ01000037.1 Clostridium chromiireducens strain NM79_F5 NODE_37_length_55112_cov_258.062, whole genome shotgun sequence (55112 bp)
Overview 1 RT 1: 43531-49295 bp Neighborhood of RT #1 [43531, 49786] DUF772 RVT-GII HNHc PRK09183 HTH_3 COG4584 COG4584 Feature: gene Location: 43531-44058 bp Feature: gene Location: 44143-45024 bp Feature: domain Description: DUF772 Location: 44335-44539 bp Feature: domain Description: DUF772 Location: 44335 -445 39 bp Feature: gene Location: 45510-47207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45705-46407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 705 -46407 bp Feature: domain Description: HNHc Note: nucleases Location: 46962-47097 bp Feature: domain Description: HNHc Note: nucleases Location: 46962-47097 bp Feature: gene Location: 47746-48450 bp Feature: domain Description: PRK09183 Location: 47752-48436 bp Feature: domain Description: PRK09183 Location: 4775 2-48436 bp Feature: gene Location: 48491-49786 bp Feature: domain Description: HTH_3 Location: 48584-48686 bp Feature: domain Description: HTH_3 Location: 485 84-48686 bp Feature: domain Description: COG4584 Location: 48695-48866 bp Feature: domain Description: COG45 84 Location: 48695 -48866 bp Feature: domain Description: COG4584 Location: 48908-49295 bp Feature: domain Description: COG45 84 Location: 48908-49295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, HNHc (smart00507), PRK09183 (transposase/IS protein; Provisional), HTH_3 (pfam01381), COG4584 (Transposase )

Seq: WSRQ01000008.1 Clostridium chromiireducens strain NM79_F5 NODE_8_length_171627_cov_30.145, whole genome shotgun sequence (171627 bp)
Overview 1 RT 1: 59844-71656 bp Neighborhood of RT #1 [59844, 71656] HATPase_c COG5263 RVT-GII GIIM HNHc xerS INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII PRK08295 Feature: gene Location: 59844-62942 bp Feature: domain Description: HATPase_c Location: 59961-60291 bp Feature: domain Description: HATPase_c Location: 5996 1-6 0291 bp Feature: gene Location: 63626-64102 bp Feature: domain Description: COG5263 Location: 63782-64094 bp Feature: domain Description: COG526 3 Location: 6 3782-6 4094 bp Feature: gene Location: 64539-65645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64542-64848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 4542-6 4848 bp Feature: domain Description: GIIM Note: maturase Location: 64926-65085 bp Feature: domain Description: GIIM Note: maturase Location: 6 4926 -6 5085 bp Feature: domain Description: HNHc Note: nucleases Location: 65397-65535 bp Feature: domain Description: HNHc Note: nucleases Location: 6 5397-6 5535 bp Feature: gene Location: 65805-67055 bp Feature: domain Description: xerS Location: 66165-66282 bp Feature: domain Description: xerS Location: 6 6 16 5-6 6 282 bp Feature: domain Description: INT_RitA_C_like Location: 66477-67014 bp Feature: domain Description: INT_RitA_C_like Location: 6 6 477-6 7014 bp Feature: gene Location: 67048-68028 bp Feature: domain Description: INT_RitB_C_like Location: 67384-67966 bp Feature: domain Description: INT_RitB_C_like Location: 6 7384-6 796 6 bp Feature: gene Location: 68021-69028 bp Feature: domain Description: Phage_int_SAM_1 Location: 68066-68312 bp Feature: domain Description: Phage_int_SAM_1 Location: 6 806 6 -6 8312 bp Feature: domain Description: INT_RitC_C_like Location: 68393-68945 bp Feature: domain Description: INT_RitC_C_like Location: 6 8393-6 8945 bp Feature: gene Location: 69137-69778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69395-69773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 9395-6 9773 bp Feature: gene Location: 70872-71147 bp Feature: domain Description: PRK08295 Location: 70893-71139 bp Feature: domain Description: PRK08295 Location: 70893-71139 bp Feature: gene Location: 71345-71656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c (smart00387), COG5263 (Glucan-binding domain (YG repeat) ), RVT-GII, GIIM (pfam08388), HNHc (smart00507), xerS (PRK05084), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182)
PRK08295 (RNA polymerase sporulation sigma factor SigH)