myRT

myRT report for GCA_009769385.1_ASM976938v1

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Seq: VKAB01000002.1 Saccharothrix deserti strain BMP B8144 Scaffold2_1, whole genome shotgun sequence (562689 bp)
Overview 1 RT 1: 1457-5968 bp Neighborhood of RT #1 [1457, 6084] PRK06526 RVT-GII GIIM PRK09183 Rv1155_F420 Feature: gene Location: 1457-2470 bp Feature: gene Location: 2518-3102 bp Feature: domain Description: PRK06526 Location: 2545-3061 bp Feature: domain Description: PRK06526 Location: 2545-3061 bp Feature: gene Location: 3645-5156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3972-4653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3972-4653 bp Feature: domain Description: GIIM Note: maturase Location: 4725-4947 bp Feature: domain Description: GIIM Note: maturase Location: 4725-4947 bp Feature: gene Location: 5275-5508 bp Feature: domain Description: PRK09183 Location: 5284-5497 bp Feature: domain Description: PRK091 83 Location: 5284-5497 bp Feature: gene Location: 5545-6084 bp Feature: domain Description: Rv1155_F420 Location: 5701-5968 bp Feature: domain Description: Rv1 1 55_F420 Location: 5701 -5968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional), Rv1155_F420 (TIGR03618)

Seq: VKAB01000027.1 Saccharothrix deserti strain BMP B8144 Scaffold21_1, whole genome shotgun sequence (171345 bp)
Overview 1 RT 1: 20772-23971 bp Neighborhood of RT #1 [20772, 23971] pfam03781 RVT-CRISPR-like QueC Feature: gene Location: 20772-21242 bp Feature: gene Location: 21239-21796 bp Feature: domain Description: pfam03781 Location: 21386-21788 bp Feature: domain Description: pfam03781 Location: 2 1386-2 1788 bp Feature: gene Location: 21802-22599 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 22027-22561 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 2 02 7-2 2 561 bp Feature: gene Location: 22782-23486 bp Feature: domain Description: QueC Location: 22818-23478 bp Feature: domain Description: QueC Location: 2 2 818-2 3478 bp Feature: gene Location: 23489-23971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-CRISPR, QueC (pfam06508)

Seq: VKAB01000045.1 Saccharothrix deserti strain BMP B8144 Scaffold37_1, whole genome shotgun sequence (71533 bp)
Overview 1 RT 1: 1-5000 bp Neighborhood of RT #1 [1, 5020] RVT-GII GIIM Cellulase HTH_34 Feature: gene Location: 1-1581 bp Feature: gene Location: 2325-3170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2334-2481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 3 4-2481 bp Feature: domain Description: GIIM Note: maturase Location: 2550-2784 bp Feature: domain Description: GIIM Note: maturase Location: 2550-2784 bp Feature: gene Location: 3493-4479 bp Feature: domain Description: Cellulase Location: 3610-4348 bp Feature: domain Description: Cellulase Location: 3 610-43 48 bp Feature: gene Location: 4712-5020 bp Feature: domain Description: HTH_34 Location: 4766-5000 bp Feature: domain Description: HTH_3 4 Location: 4766-5000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Cellulase (pfam00150), HTH_34 (pfam13601)

Seq: VKAB01000052.1 Saccharothrix deserti strain BMP B8144 Scaffold44_1, whole genome shotgun sequence (54618 bp)
Overview 1 RT 1: 75-2923 bp Neighborhood of RT #1 [75, 3213] RVT-GII PksD Feature: gene Location: 75-1052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-981 bp Feature: gene Location: 1636-2118 bp Feature: gene Location: 2512-3213 bp Feature: domain Description: PksD Location: 2533-2923 bp Feature: domain Description: PksD Location: 2533-2923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PksD (COG3321)

Seq: VKAB01000085.1 Saccharothrix deserti strain BMP B8144 Scaffold74_1, whole genome shotgun sequence (15039 bp)
Overview 1 RT 1: 10277-14418 bp Neighborhood of RT #1 [10277, 14418] HTH_32 rve_3 COG3293 COG3293 RVT-GII Intron_maturas2 HNHc RVT-GII Feature: gene Location: 10277-11263 bp Feature: domain Description: HTH_32 Location: 10430-10631 bp Feature: domain Description: HTH_32 Location: 10430-10631 bp Feature: domain Description: rve_3 Location: 10970-11165 bp Feature: domain Description: rve_3 Location: 10970-11165 bp Feature: gene Location: 11460-12203 bp Feature: domain Description: COG3293 Location: 11472-11736 bp Feature: domain Description: COG3293 Location: 11472-11736 bp Feature: domain Description: COG3293 Location: 11760-12132 bp Feature: domain Description: COG3293 Location: 11760-12132 bp Feature: gene Location: 12457-13602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12463-12877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12463-12877 bp Feature: domain Description: Intron_maturas2 Location: 12979-13210 bp Feature: domain Description: Intron_maturas2 Location: 12979-13210 bp Feature: domain Description: HNHc Note: nucleases Location: 13402-13558 bp Feature: domain Description: HNHc Note: nucleases Location: 13402-135 5 8 bp Feature: gene Location: 13814-14239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14075-14237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14075 -14237 bp Feature: gene Location: 14263-14418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), rve_3 (pfam13683), COG3293 (Transposase ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VKAB01000129.1 Saccharothrix deserti strain BMP B8144 Scaffold118_1, whole genome shotgun sequence (2416 bp)
Overview 1 RT 1: 331-2122 bp Neighborhood of RT #1 [331, 2322] RVT-GII Intron_maturas2 Feature: gene Location: 331-462 bp Feature: gene Location: 724-2322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1780 bp Feature: domain Description: Intron_maturas2 Location: 1894-2122 bp Feature: domain Description: Intron_maturas2 Location: 1894-2122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)