myRT

myRT report for GCA_009773835.1_ASM977383v1

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Seq: WSNY01000015.1 Bacterium isolate X3_MaxBin.054 scaffold_2516, whole genome shotgun sequence (9626 bp)
Overview 1 RT 1: 4635-9231 bp Neighborhood of RT #1 [4635, 9275] RDD RDD RVT-CRISPR RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 4635-5528 bp Feature: gene Location: 5778-6332 bp Feature: domain Description: RDD Location: 5931-5997 bp Feature: domain Description: RDD Location: 5931 -5997 bp Feature: domain Description: RDD Location: 5997-6288 bp Feature: domain Description: RDD Location: 5997-6288 bp Feature: gene Location: 6358-7776 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6577-6910 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6577-691 0 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7225-7540 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 7225-7540 bp Feature: gene Location: 7972-8991 bp Feature: domain Description: Cas1_I-II-III Location: 7981-8929 bp Feature: domain Description: Cas1 _I-II-III Location: 7981 -8929 bp Feature: gene Location: 9000-9275 bp Feature: domain Description: Cas2_I_II_III Location: 9009-9231 bp Feature: domain Description: Cas2_I_II_III Location: 9009-9231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RDD (pfam06271), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: WSNY01000338.1 Bacterium isolate X3_MaxBin.054 scaffold_8236, whole genome shotgun sequence (3071 bp)
Overview 1 RT 1: 610-3060 bp Neighborhood of RT #1 [610, 3068] RVT_N RVT-GII YkfC HNHc HigA Feature: gene Location: 610-750 bp Feature: gene Location: 751-2655 bp Feature: domain Description: RVT_N Location: 997-1240 bp Feature: domain Description: RVT_N Location: 997-12 40 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1285-1927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 85-192 7 bp Feature: domain Description: YkfC Location: 1927-2314 bp Feature: domain Description: YkfC Location: 192 7-2 314 bp Feature: domain Description: HNHc Note: nucleases Location: 2437-2596 bp Feature: domain Description: HNHc Note: nucleases Location: 2 437-2 596 bp Feature: gene Location: 2874-3068 bp Feature: domain Description: HigA Location: 2883-3060 bp Feature: domain Description: HigA Location: 2 883-3060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), HigA (COG5499)

Seq: WSNY01000468.1 Bacterium isolate X3_MaxBin.054 scaffold_9910, whole genome shotgun sequence (2673 bp)
Overview 1 RT 1: 189-2654 bp Neighborhood of RT #1 [189, 2671] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 189-323 bp Feature: gene Location: 399-578 bp Feature: domain Description: YfmG Location: 405-522 bp Feature: domain Description: YfmG Location: 405-522 bp Feature: gene Location: 620-1702 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 830-1469 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 83 0-1469 bp Feature: gene Location: 1709-2053 bp Feature: domain Description: Avd_like Location: 1727-2033 bp Feature: domain Description: Avd_like Location: 1727-203 3 bp Feature: gene Location: 2162-2671 bp Feature: domain Description: YfmG Location: 2165-2654 bp Feature: domain Description: YfmG Location: 2165-2654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)