myRT

myRT report for GCA_009774145.1_ASM977414v1

Download annotations/find similar RTs

Seq: VSND01000114.1 Lachnospiraceae bacterium isolate S9779_S26_bin.31 S9779_S26_S9779_S26_bin.31_contig_114, whole genome shotgun sequence (8468 bp)
Overview 1 RT 1: 2173-7974 bp Neighborhood of RT #1 [2173, 8027] Csx1_III-U RVT-CRISPR COG4951 Cas2_I_II_III Cas1_I-II-III Feature: gene Location: 2173-2802 bp Feature: domain Description: Csx1_III-U Location: 2281-2638 bp Feature: domain Description: Csx1 _III-U Location: 2281 -2638 bp Feature: gene Location: 2892-3026 bp Feature: gene Location: 3819-6659 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4029-4629 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4029-4629 bp Feature: domain Description: COG4951 Location: 5283-5892 bp Feature: domain Description: COG4951 Location: 5283-5892 bp Feature: gene Location: 6748-7038 bp Feature: domain Description: Cas2_I_II_III Location: 6754-6994 bp Feature: domain Description: Cas2_I_II_III Location: 6754-6994 bp Feature: gene Location: 7029-8027 bp Feature: domain Description: Cas1_I-II-III Location: 7041-7974 bp Feature: domain Description: Cas1 _I-II-III Location: 7041 -7974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx1_III-U (cl21570), RVT-CRISPR, COG4951 (Uncharacterized protein ), Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656)

Seq: VSND01000021.1 Lachnospiraceae bacterium isolate S9779_S26_bin.31 S9779_S26_S9779_S26_bin.31_contig_21, whole genome shotgun sequence (60799 bp)
Overview 1 RT 1: 11089-15214 bp Neighborhood of RT #1 [11089, 15214] RVT_N RVT-GII GIIM Feature: gene Location: 11089-11682 bp Feature: gene Location: 11684-11920 bp Feature: gene Location: 12119-14014 bp Feature: domain Description: RVT_N Location: 12389-12626 bp Feature: domain Description: RVT_N Location: 12 389-12 62 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12677-13322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 677-1332 2 bp Feature: domain Description: GIIM Note: maturase Location: 13379-13610 bp Feature: domain Description: GIIM Note: maturase Location: 13379-13610 bp Feature: gene Location: 14372-14641 bp Feature: gene Location: 14675-15214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VSND01000003.1 Lachnospiraceae bacterium isolate S9779_S26_bin.31 S9779_S26_S9779_S26_bin.31_contig_3, whole genome shotgun sequence (144478 bp)
Overview 1 RT 1: 120009-122764 bp Neighborhood of RT #1 [120009, 122764] Avd_like RVT-DGRs Feature: gene Location: 120009-120422 bp Feature: domain Description: Avd_like Location: 120075-120384 bp Feature: domain Description: Avd_like Location: 120075-1203 84 bp Feature: gene Location: 120455-120820 bp Feature: gene Location: 120817-122013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 121024-121687 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 121024-121687 bp Feature: gene Location: 122120-122470 bp Feature: gene Location: 122483-122764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs