myRT

myRT report for GCA_009774155.1_ASM977415v1

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Seq: VSNE01000133.1 Lachnospiraceae bacterium isolate S9761_S13_bin.16 S9761_S13_S9761_S13_bin.16_contig_133, whole genome shotgun sequence (7216 bp)
Overview 1 RT 1: 5085-6965 bp Neighborhood of RT #1 [5085, 7144] Fer4 Fer4 RVT-GII GIIM Feature: gene Location: 5085-5255 bp Feature: domain Description: Fer4 Location: 5094-5160 bp Feature: domain Description: Fer4 Location: 5094-51 60 bp Feature: domain Description: Fer4 Location: 5178-5247 bp Feature: domain Description: Fer4 Location: 51 78-5247 bp Feature: gene Location: 5294-5428 bp Feature: gene Location: 5753-7144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6068-6692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6068-6692 bp Feature: domain Description: GIIM Note: maturase Location: 6749-6965 bp Feature: domain Description: GIIM Note: maturase Location: 6749-6965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Fer4 (pfam00037), RVT-GII, GIIM (pfam08388)

Seq: VSNE01000439.1 Lachnospiraceae bacterium isolate S9761_S13_bin.16 S9761_S13_S9761_S13_bin.16_contig_439, whole genome shotgun sequence (14180 bp)
Overview 1 RT 1: 6770-10634 bp Neighborhood of RT #1 [6770, 10634] RVT-DGRs Avd_like Feature: gene Location: 6770-7048 bp Feature: gene Location: 7084-7494 bp Feature: gene Location: 7536-8855 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7713-8418 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7713-8418 bp Feature: gene Location: 9148-9528 bp Feature: domain Description: Avd_like Location: 9175-9484 bp Feature: domain Description: Avd_like Location: 9175-9484 bp Feature: gene Location: 9810-10634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: VSNE01000440.1 Lachnospiraceae bacterium isolate S9761_S13_bin.16 S9761_S13_S9761_S13_bin.16_contig_440, whole genome shotgun sequence (6121 bp)
Overview 1 RT 1: 446-2734 bp Neighborhood of RT #1 [446, 2734] RVT-UG27 Feature: gene Location: 446-580 bp Feature: gene Location: 582-752 bp Feature: gene Location: 893-2167 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1082-1715 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1082-1715 bp Feature: gene Location: 2160-2414 bp Feature: gene Location: 2417-2734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VSNE01000444.1 Lachnospiraceae bacterium isolate S9761_S13_bin.16 S9761_S13_S9761_S13_bin.16_contig_444, whole genome shotgun sequence (11197 bp)
Overview 1 RT 1: 356-5577 bp Neighborhood of RT #1 [356, 5687] RVT-DGRs ApoLp-III_like ApoLp-III_like Feature: gene Location: 356-484 bp Feature: gene Location: 654-950 bp Feature: gene Location: 947-2065 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1154-1754 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1154 -1754 bp Feature: gene Location: 2441-4552 bp Feature: gene Location: 4572-5687 bp Feature: domain Description: ApoLp-III_like Location: 5208-5391 bp Feature: domain Description: ApoLp-III_like Location: 5208-5391 bp Feature: domain Description: ApoLp-III_like Location: 5502-5577 bp Feature: domain Description: ApoLp-III_like Location: 5502-5577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ApoLp-III_like (cl21509)

Seq: VSNE01000458.1 Lachnospiraceae bacterium isolate S9761_S13_bin.16 S9761_S13_S9761_S13_bin.16_contig_458, whole genome shotgun sequence (6004 bp)
Overview 1 RT 1: 222-2848 bp Neighborhood of RT #1 [222, 2862] XhlA RVT-DGRs Avd_like Feature: gene Location: 222-533 bp Feature: gene Location: 547-813 bp Feature: domain Description: XhlA Location: 574-778 bp Feature: domain Description: XhlA Location: 5 74-778 bp Feature: gene Location: 865-1998 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1111-1771 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1111-1771 bp Feature: gene Location: 2042-2413 bp Feature: gene Location: 2452-2862 bp Feature: domain Description: Avd_like Location: 2539-2848 bp Feature: domain Description: Avd_like Location: 25 39-2848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), RVT-DGRs, Avd_like (cd16376)

Seq: VSNE01000470.1 Lachnospiraceae bacterium isolate S9761_S13_bin.16 S9761_S13_S9761_S13_bin.16_contig_470, whole genome shotgun sequence (4687 bp)
Overview 1 RT 1: 2028-4684 bp Neighborhood of RT #1 [2028, 4684] RVT-DGRs Feature: gene Location: 2028-2330 bp Feature: gene Location: 2432-2605 bp Feature: gene Location: 2952-4184 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3246-3867 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3246 -386 7 bp Feature: gene Location: 4388-4684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VSNE01000478.1 Lachnospiraceae bacterium isolate S9761_S13_bin.16 S9761_S13_S9761_S13_bin.16_contig_478, whole genome shotgun sequence (30364 bp)
Overview 1 RT 1: 10687-13080 bp Neighborhood of RT #1 [10687, 13328] Avd_like RVT-DGRs HALZ Feature: gene Location: 10687-11031 bp Feature: domain Description: Avd_like Location: 10711-11023 bp Feature: domain Description: Avd_like Location: 107 11-11023 bp Feature: gene Location: 11070-11351 bp Feature: gene Location: 11450-12577 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11663-12332 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11663-12332 bp Feature: gene Location: 12568-12924 bp Feature: gene Location: 12939-13328 bp Feature: domain Description: HALZ Location: 13008-13080 bp Feature: domain Description: HALZ Location: 13008-13080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, HALZ (smart00340)