myRT

myRT report for GCA_009774235.1_ASM977423v1

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Seq: VSNJ01000001.1 Lachnospiraceae bacterium isolate SC1116_S22_bin.13 SC1116_S22_SC1116_S22_bin.13_contig_1, whole genome shotgun sequence (106986 bp)
Overview 1 RT 1: 82160-84470 bp Neighborhood of RT #1 [82160, 84586] Avd_like PHA00653 RVT-DGRs Phage_holin_4_1 Feature: gene Location: 82160-82516 bp Feature: domain Description: Avd_like Location: 82190-82496 bp Feature: domain Description: Avd_like Location: 821 90-82496 bp Feature: gene Location: 82550-82690 bp Feature: domain Description: PHA00653 Location: 82556-82676 bp Feature: domain Description: PHA00653 Location: 82556-82676 bp Feature: gene Location: 82836-83897 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 83076-83694 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 83076-83694 bp Feature: gene Location: 83923-84153 bp Feature: gene Location: 84098-84586 bp Feature: domain Description: Phage_holin_4_1 Location: 84140-84470 bp Feature: domain Description: Phage_holin_4_1 Location: 841 40-84470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), PHA00653 (mtd;major tropism determinant), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: VSNJ01000014.1 Lachnospiraceae bacterium isolate SC1116_S22_bin.13 SC1116_S22_SC1116_S22_bin.13_contig_14, whole genome shotgun sequence (46292 bp)
Overview 1 RT 1: 4399-8138 bp Neighborhood of RT #1 [4399, 8138] RVT-DGRs Avd_like Feature: gene Location: 4399-4773 bp Feature: gene Location: 4781-4960 bp Feature: gene Location: 5082-6173 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5292-5955 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52 92 -5955 bp Feature: gene Location: 6537-6962 bp Feature: domain Description: Avd_like Location: 6612-6936 bp Feature: domain Description: Avd_like Location: 6612 -6936 bp Feature: gene Location: 7089-8138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: VSNJ01000194.1 Lachnospiraceae bacterium isolate SC1116_S22_bin.13 SC1116_S22_SC1116_S22_bin.13_contig_194, whole genome shotgun sequence (6867 bp)
Overview 1 RT 1: 303-2949 bp Neighborhood of RT #1 [303, 3032] RVT-GII GIIM RVT_N PGRP Glucosaminidase Feature: gene Location: 303-1622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 09-93 0 bp Feature: domain Description: GIIM Note: maturase Location: 987-1218 bp Feature: domain Description: GIIM Note: maturase Location: 987-1218 bp Feature: gene Location: 1787-1972 bp Feature: RT Description: RVT_N Location: 1832-1940 bp Feature: RT Description: RVT_N Location: 183 2-1940 bp Feature: gene Location: 2058-3032 bp Feature: domain Description: PGRP Location: 2160-2526 bp Feature: domain Description: PGRP Location: 2160-2526 bp Feature: domain Description: Glucosaminidase Location: 2727-2949 bp Feature: domain Description: Glucosaminidase Location: 2727-2949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), PGRP (smart00701), Glucosaminidase (pfam01832), RVT-GII, GIIM (pfam08388)

Seq: VSNJ01000031.1 Lachnospiraceae bacterium isolate SC1116_S22_bin.13 SC1116_S22_SC1116_S22_bin.13_contig_31, whole genome shotgun sequence (32554 bp)
Overview 1 RT 1: 29474-32421 bp Neighborhood of RT #1 [29474, 32507] RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 29474-30355 bp Feature: gene Location: 30408-30542 bp Feature: gene Location: 30556-31662 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30691-31255 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30691-31255 bp Feature: gene Location: 32157-32507 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 32205-32421 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 32205-324 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: VSNJ01000312.1 Lachnospiraceae bacterium isolate SC1116_S22_bin.13 SC1116_S22_SC1116_S22_bin.13_contig_312, whole genome shotgun sequence (2063 bp)
Overview 1 RT 1: 2-1247 bp Neighborhood of RT #1 [2, 1480] RVT-Retrons Feature: gene Location: 2-1480 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 623-1247 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 623-1247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons