myRT

myRT report for GCA_009774435.1_ASM977443v1

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Seq: VSNS01000147.1 Lachnospiraceae bacterium isolate S9741_S7_spades_bin.13 S9741_S7_bin.13_contig_147, whole genome shotgun sequence (9283 bp)
Overview 1 RT 1: 165-4253 bp Neighborhood of RT #1 [165, 4253] RVT-GII GIIM pcrA pcrA Feature: gene Location: 165-665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171-303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 -303 bp Feature: domain Description: GIIM Note: maturase Location: 429-633 bp Feature: domain Description: GIIM Note: maturase Location: 429-633 bp Feature: gene Location: 1469-4054 bp Feature: domain Description: pcrA Location: 1484-3443 bp Feature: domain Description: pcrA Location: 1 484-3443 bp Feature: domain Description: pcrA Location: 3857-4040 bp Feature: domain Description: pcrA Location: 3857-4040 bp Feature: gene Location: 4059-4253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pcrA (TIGR01073), RVT-GII, GIIM (pfam08388)

Seq: VSNS01000238.1 Lachnospiraceae bacterium isolate S9741_S7_spades_bin.13 S9741_S7_bin.13_contig_238, whole genome shotgun sequence (5665 bp)
Overview 1 RT 1: 652-5604 bp Neighborhood of RT #1 [652, 5663] Tn7_Tnp_TnsA_N TraC-F-type RVT-GII KOG4768 VirB4 Feature: gene Location: 652-1416 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 877-1147 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 877-1147 bp Feature: gene Location: 1565-2464 bp Feature: domain Description: TraC-F-type Location: 1691-2249 bp Feature: domain Description: TraC-F-type Location: 1691-2 2 49 bp Feature: gene Location: 2602-4425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2902-3601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 902 -3601 bp Feature: domain Description: KOG4768 Location: 3736-3838 bp Feature: domain Description: KOG4768 Location: 3736-3838 bp Feature: gene Location: 4650-4787 bp Feature: gene Location: 5106-5663 bp Feature: domain Description: VirB4 Location: 5112-5604 bp Feature: domain Description: VirB4 Location: 5112 -5604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), VirB4 (COG3451), Tn7_Tnp_TnsA_N (pfam08722)

Seq: VSNS01000390.1 Lachnospiraceae bacterium isolate S9741_S7_spades_bin.13 S9741_S7_bin.13_contig_390, whole genome shotgun sequence (2725 bp)
Overview 1 RT 1: 1-2708 bp Neighborhood of RT #1 [1, 2722] Gcd14 RVT-Retrons NERD zf-C4_Topoisom Feature: gene Location: 1-162 bp Feature: domain Description: Gcd14 Location: 46-136 bp Feature: domain Description: Gcd14 Location: 46-13 6 bp Feature: gene Location: 529-996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 532-913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53 2-913 bp Feature: gene Location: 1279-1455 bp Feature: gene Location: 1901-2722 bp Feature: domain Description: NERD Location: 1964-2309 bp Feature: domain Description: NERD Location: 1964-23 09 bp Feature: domain Description: zf-C4_Topoisom Location: 2588-2708 bp Feature: domain Description: zf-C4_Topoisom Location: 2588-2708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gcd14 (COG2519), NERD (pfam08378), zf-C4_Topoisom (pfam01396), RVT-Retrons