myRT

myRT report for GCA_009774465.1_ASM977446v1

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Seq: VSNT01000292.1 Lachnospiraceae bacterium isolate SA1418_S29_bin.6 SA1418_S29_SA1418_S29_bin.6_contig_292, whole genome shotgun sequence (3681 bp)
Overview 1 RT 1: 297-3520 bp Neighborhood of RT #1 [297, 3520] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 297-932 bp Feature: domain Description: TraG-D_C Location: 360-711 bp Feature: domain Description: TraG-D_C Location: 360-71 1 bp Feature: gene Location: 1041-3008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1458-2292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 458-2292 bp Feature: domain Description: Intron_maturas2 Location: 2370-2670 bp Feature: domain Description: Intron_maturas2 Location: 2370-2670 bp Feature: gene Location: 3200-3520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: VSNT01000293.1 Lachnospiraceae bacterium isolate SA1418_S29_bin.6 SA1418_S29_SA1418_S29_bin.6_contig_293, whole genome shotgun sequence (2836 bp)
Overview 1 RT 1: 168-2832 bp Neighborhood of RT #1 [168, 2834] RVT-GII Intron_maturas2 HNHc AAA_10 Feature: gene Location: 168-296 bp Feature: gene Location: 299-682 bp Feature: gene Location: 689-2518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 959-1781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 959-1781 bp Feature: domain Description: Intron_maturas2 Location: 1856-2162 bp Feature: domain Description: Intron_maturas2 Location: 1856-2 162 bp Feature: domain Description: HNHc Note: nucleases Location: 2333-2483 bp Feature: domain Description: HNHc Note: nucleases Location: 2 333-2 483 bp Feature: gene Location: 2640-2834 bp Feature: domain Description: AAA_10 Location: 2703-2832 bp Feature: domain Description: AAA_10 Location: 2 703-2 832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VSNT01000333.1 Lachnospiraceae bacterium isolate SA1418_S29_bin.6 SA1418_S29_SA1418_S29_bin.6_contig_333, whole genome shotgun sequence (6157 bp)
Overview 1 RT 1: 621-4675 bp Neighborhood of RT #1 [621, 4701] RVT-GII Intron_maturas2 COG4646 HELICc MobC Feature: gene Location: 621-2447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885-1716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885-1716 bp Feature: domain Description: Intron_maturas2 Location: 1803-2097 bp Feature: domain Description: Intron_maturas2 Location: 1803 -2097 bp Feature: gene Location: 2534-4366 bp Feature: domain Description: COG4646 Location: 2540-2942 bp Feature: domain Description: COG4646 Location: 2540-2942 bp Feature: domain Description: HELICc Location: 2972-3368 bp Feature: domain Description: HELICc Location: 2972-3 3 68 bp Feature: gene Location: 4363-4701 bp Feature: domain Description: MobC Location: 4552-4675 bp Feature: domain Description: MobC Location: 4552-4675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), MobC (pfam05713), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VSNT01000337.1 Lachnospiraceae bacterium isolate SA1418_S29_bin.6 SA1418_S29_SA1418_S29_bin.6_contig_337, whole genome shotgun sequence (8506 bp)
Overview 1 RT 1: 2262-7552 bp Neighborhood of RT #1 [2262, 7563] VirD4 RVT-GII Intron_maturas2 VirD4 Feature: gene Location: 2262-2672 bp Feature: gene Location: 2795-3490 bp Feature: domain Description: VirD4 Location: 2804-2939 bp Feature: domain Description: VirD4 Location: 2804 -2939 bp Feature: gene Location: 3739-5559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4006-4840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 006-4 84 0 bp Feature: domain Description: Intron_maturas2 Location: 4921-5266 bp Feature: domain Description: Intron_maturas2 Location: 4 921-5266 bp Feature: gene Location: 5559-5831 bp Feature: gene Location: 6166-7563 bp Feature: domain Description: VirD4 Location: 6343-7552 bp Feature: domain Description: VirD4 Location: 634 3-7552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VSNT01000006.1 Lachnospiraceae bacterium isolate SA1418_S29_bin.6 SA1418_S29_SA1418_S29_bin.6_contig_6, whole genome shotgun sequence (56563 bp)
Overview 1 RT 1: 23034-30328 bp Neighborhood of RT #1 [23034, 30351] LolD SalY SalY RVT-Retrons RVT-Retrons AIM24 COG1373 Feature: gene Location: 23034-23738 bp Feature: domain Description: LolD Location: 23046-23706 bp Feature: domain Description: LolD Location: 23046-23706 bp Feature: gene Location: 23752-26004 bp Feature: domain Description: SalY Location: 24151-24592 bp Feature: domain Description: SalY Location: 2415 1-245 92 bp Feature: domain Description: SalY Location: 25546-25990 bp Feature: domain Description: SalY Location: 25 5 46-25 990 bp Feature: gene Location: 26054-27265 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26057-26261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2605 7-26261 bp Feature: gene Location: 27277-27786 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27400-27760 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27400-27760 bp Feature: gene Location: 28044-28721 bp Feature: domain Description: AIM24 Location: 28053-28668 bp Feature: domain Description: AIM24 Location: 2805 3-28668 bp Feature: gene Location: 28993-30351 bp Feature: domain Description: COG1373 Location: 29008-30328 bp Feature: domain Description: COG1373 Location: 29008-30328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolD (COG1136), SalY (COG0577), RVT-Retrons, AIM24 (pfam01987), COG1373 (Predicted ATPase, AAA+ superfamily )