myRT

myRT report for GCA_009774535.1_ASM977453v1

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Seq: VSNY01000170.1 Lachnospiraceae bacterium isolate SC1140_S46_bin.7 SC1140_S46_SC1140_S46_bin.7_contig_170, whole genome shotgun sequence (8201 bp)
Overview 1 RT 1: 991-6789 bp Neighborhood of RT #1 [991, 6789] N6_N4_Mtase TraC-F-type RVT-GII Intron_maturas2 HNHc Feature: gene Location: 991-1776 bp Feature: domain Description: N6_N4_Mtase Location: 1096-1717 bp Feature: domain Description: N6_N4_Mtase Location: 1 096-1 71 7 bp Feature: gene Location: 1766-3262 bp Feature: domain Description: TraC-F-type Location: 1808-3059 bp Feature: domain Description: TraC-F-type Location: 1 808-3059 bp Feature: gene Location: 3391-5211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661-4480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3661 -4480 bp Feature: domain Description: Intron_maturas2 Location: 4558-4852 bp Feature: domain Description: Intron_maturas2 Location: 4558-4852 bp Feature: domain Description: HNHc Note: nucleases Location: 5023-5173 bp Feature: domain Description: HNHc Note: nucleases Location: 5023-51 73 bp Feature: gene Location: 5315-5536 bp Feature: gene Location: 5821-6789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_N4_Mtase (pfam01555)

Seq: VSNY01000192.1 Lachnospiraceae bacterium isolate SC1140_S46_bin.7 SC1140_S46_SC1140_S46_bin.7_contig_192, whole genome shotgun sequence (7202 bp)
Overview 1 RT 1: 5007-7156 bp Neighborhood of RT #1 [5007, 7200] RVT-GII Feature: gene Location: 5007-5510 bp Feature: gene Location: 5665-5895 bp Feature: gene Location: 6073-7200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6337-7156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6337-7156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSNY01000221.1 Lachnospiraceae bacterium isolate SC1140_S46_bin.7 SC1140_S46_SC1140_S46_bin.7_contig_221, whole genome shotgun sequence (5444 bp)
Overview 1 RT 1: 1-5441 bp Neighborhood of RT #1 [1, 5441] YtxK COG4646 RVT-GII Feature: gene Location: 1-2610 bp Feature: domain Description: YtxK Location: 124-532 bp Feature: domain Description: YtxK Location: 124-53 2 bp Feature: domain Description: COG4646 Location: 601-2578 bp Feature: domain Description: COG4646 Location: 601-2578 bp Feature: gene Location: 3286-5193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3610-4324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 610-43 24 bp Feature: gene Location: 5283-5441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII

Seq: VSNY01000025.1 Lachnospiraceae bacterium isolate SC1140_S46_bin.7 SC1140_S46_SC1140_S46_bin.7_contig_25, whole genome shotgun sequence (33360 bp)
Overview 1 RT 1: 27144-29768 bp Neighborhood of RT #1 [27144, 29776] RVT-DGRs Phage_XkdX Feature: gene Location: 27144-27779 bp Feature: gene Location: 27840-27983 bp Feature: gene Location: 28094-29332 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28355-29075 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28355-29075 bp Feature: gene Location: 29314-29613 bp Feature: gene Location: 29618-29776 bp Feature: domain Description: Phage_XkdX Location: 29651-29768 bp Feature: domain Description: Phage_XkdX Location: 29651-29768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: VSNY01000309.1 Lachnospiraceae bacterium isolate SC1140_S46_bin.7 SC1140_S46_SC1140_S46_bin.7_contig_309, whole genome shotgun sequence (2670 bp)
Overview 1 RT 1: 1-2216 bp Neighborhood of RT #1 [1, 2560] Relaxase RVT-GII Intron_maturas2 Feature: gene Location: 1-216 bp Feature: domain Description: Relaxase Location: 4-151 bp Feature: domain Description: Relaxase Location: 4-15 1 bp Feature: gene Location: 749-2560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013-1835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013-1835 bp Feature: domain Description: Intron_maturas2 Location: 1910-2216 bp Feature: domain Description: Intron_maturas2 Location: 1910-2216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RVT-GII, Intron_maturas2 (pfam01348)

Seq: VSNY01000348.1 Lachnospiraceae bacterium isolate SC1140_S46_bin.7 SC1140_S46_SC1140_S46_bin.7_contig_348, whole genome shotgun sequence (2005 bp)
Overview 1 RT 1: 2-1861 bp Neighborhood of RT #1 [2, 2004] RVT_N RVT-GII GIIM Feature: gene Location: 2-142 bp Feature: gene Location: 532-2004 bp Feature: RT Description: RVT_N Location: 625-862 bp Feature: RT Description: RVT_N Location: 6 25-86 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1861 bp Feature: domain Description: GIIM Note: maturase Location: 16 24-186 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VSNY01000006.1 Lachnospiraceae bacterium isolate SC1140_S46_bin.7 SC1140_S46_SC1140_S46_bin.7_contig_6, whole genome shotgun sequence (48074 bp)
Overview 1 RT 1: 14515-18958 bp Neighborhood of RT #1 [14515, 18958] MobC Helicase_C RVT-GII HNHc Feature: gene Location: 14515-14796 bp Feature: domain Description: MobC Location: 14647-14737 bp Feature: domain Description: MobC Location: 14647 -147 37 bp Feature: gene Location: 14853-16481 bp Feature: domain Description: Helicase_C Location: 15276-15495 bp Feature: domain Description: Helicase_C Location: 1527 6-15495 bp Feature: gene Location: 16488-18398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16797-17538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167 97 -17 538 bp Feature: domain Description: HNHc Note: nucleases Location: 18126-18252 bp Feature: domain Description: HNHc Note: nucleases Location: 18126-18252 bp Feature: gene Location: 18445-18723 bp Feature: gene Location: 18824-18958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), Helicase_C (pfam00271), RVT-GII, HNHc (smart00507)