myRT

myRT report for GCA_009774615.1_ASM977461v1

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Seq: VSOC01000105.1 Lachnospiraceae bacterium isolate S9743_S8_spades_bin.10 S9743_S8_bin.10_contig_105, whole genome shotgun sequence (13382 bp)
Overview 1 RT 1: 10774-13108 bp Neighborhood of RT #1 [10774, 13137] KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 10774-11568 bp Feature: gene Location: 11638-12141 bp Feature: domain Description: KOG1000 Location: 11713-11977 bp Feature: domain Description: KOG1 000 Location: 1 1 71 3-1 1 977 bp Feature: gene Location: 12175-13137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12220-12406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2220-1 2406 bp Feature: domain Description: Intron_maturas2 Location: 12598-12829 bp Feature: domain Description: Intron_maturas2 Location: 1 2598-1 2829 bp Feature: domain Description: HNHc Note: nucleases Location: 12934-13108 bp Feature: domain Description: HNHc Note: nucleases Location: 1 2934-1 31 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VSOC01000194.1 Lachnospiraceae bacterium isolate S9743_S8_spades_bin.10 S9743_S8_bin.10_contig_194, whole genome shotgun sequence (5591 bp)
Overview 1 RT 1: 238-1724 bp Neighborhood of RT #1 [238, 1729] INT_RitA_C_like RVT-GII TTRAP PRK07726 Feature: gene Location: 238-423 bp Feature: domain Description: INT_RitA_C_like Location: 244-373 bp Feature: domain Description: INT_RitA_C_like Location: 2 44-373 bp Feature: gene Location: 488-712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 497-647 bp Feature: gene Location: 812-1219 bp Feature: domain Description: TTRAP Location: 1097-1211 bp Feature: domain Description: TTRAP Location: 1097-12 11 bp Feature: gene Location: 1316-1729 bp Feature: domain Description: PRK07726 Location: 1415-1724 bp Feature: domain Description: PRK0772 6 Location: 1415-172 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), RVT-GII, TTRAP (pfam14203), PRK07726 (DNA topoisomerase 3)

Seq: VSOC01000271.1 Lachnospiraceae bacterium isolate S9743_S8_spades_bin.10 S9743_S8_bin.10_contig_271, whole genome shotgun sequence (3450 bp)
Overview 1 RT 1: 96-2373 bp Neighborhood of RT #1 [96, 2373] RVT-GII RNHCP Feature: gene Location: 96-1286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1191 bp Feature: gene Location: 1536-1961 bp Feature: domain Description: RNHCP Location: 1602-1866 bp Feature: domain Description: RNHCP Location: 1602-1866 bp Feature: gene Location: 2176-2373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RNHCP (pfam12647)

Seq: VSOC01000295.1 Lachnospiraceae bacterium isolate S9743_S8_spades_bin.10 S9743_S8_bin.10_contig_295, whole genome shotgun sequence (3028 bp)
Overview 1 RT 1: 173-2507 bp Neighborhood of RT #1 [173, 2671] RVT-Retrons COG5421 COG5421 Feature: gene Location: 173-841 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 260-431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 260-4 31 bp Feature: gene Location: 845-2671 bp Feature: domain Description: COG5421 Location: 1544-1847 bp Feature: domain Description: COG54 21 Location: 154 4 -184 7 bp Feature: domain Description: COG5421 Location: 2291-2507 bp Feature: domain Description: COG54 21 Location: 2291-2507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG5421 (Transposase )