myRT

myRT report for GCA_009774665.1_ASM977466v1

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Seq: VSOE01000040.1 Lachnospiraceae bacterium isolate S9777_S25_bin.20 S9777_S25_bin.20_contig_40, whole genome shotgun sequence (10577 bp)
Overview 1 RT 1: 1196-5733 bp Neighborhood of RT #1 [1196, 6206] PRK09736 RVT_N RVT-GII YkfC Y1_Tnp HsdR Feature: gene Location: 1196-2284 bp Feature: domain Description: PRK09736 Location: 1208-2246 bp Feature: domain Description: PRK09736 Location: 1 208-2246 bp Feature: gene Location: 2494-2655 bp Feature: gene Location: 3145-4656 bp Feature: RT Description: RVT_N Location: 3208-3451 bp Feature: RT Description: RVT_N Location: 3208-3451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3499-4153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3499-41 53 bp Feature: domain Description: YkfC Location: 4342-4507 bp Feature: domain Description: YkfC Location: 4342-4507 bp Feature: gene Location: 4767-4982 bp Feature: domain Description: Y1_Tnp Location: 4776-4977 bp Feature: domain Description: Y1 _Tnp Location: 4776-4977 bp Feature: gene Location: 5148-6206 bp Feature: domain Description: HsdR Location: 5235-5733 bp Feature: domain Description: HsdR Location: 5235-5733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09736 (5-methylcytosine-specific restriction enzyme subunit McrC; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), Y1_Tnp (pfam01797), HsdR (COG4096)

Seq: VSOE01000783.1 Lachnospiraceae bacterium isolate S9777_S25_bin.20 S9777_S25_bin.20_contig_783, whole genome shotgun sequence (4849 bp)
Overview 1 RT 1: 3087-4536 bp Neighborhood of RT #1 [3087, 4847] RVT-DGRs Feature: gene Location: 3087-3215 bp Feature: gene Location: 3385-3681 bp Feature: gene Location: 3678-4847 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3936-4536 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3936-4536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VSOE01000086.1 Lachnospiraceae bacterium isolate S9777_S25_bin.20 S9777_S25_bin.20_contig_86, whole genome shotgun sequence (8133 bp)
Overview 1 RT 1: 2463-7852 bp Neighborhood of RT #1 [2463, 8130] YesN YesN PRK10150 RVT-Retrons DUF5301 DUF3221 Feature: gene Location: 2463-4079 bp Feature: domain Description: YesN Location: 2478-2970 bp Feature: domain Description: YesN Location: 2478-2970 bp Feature: domain Description: YesN Location: 3657-4068 bp Feature: domain Description: YesN Location: 3 657-4068 bp Feature: gene Location: 4180-5988 bp Feature: domain Description: PRK10150 Location: 4183-5980 bp Feature: domain Description: PRK10150 Location: 4183 -5980 bp Feature: gene Location: 6257-7477 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6632-7193 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 663 2-7193 bp Feature: gene Location: 7495-8130 bp Feature: domain Description: DUF5301 Location: 7501-7567 bp Feature: domain Description: DUF53 01 Location: 7501-7567 bp Feature: domain Description: DUF3221 Location: 7732-7852 bp Feature: domain Description: DUF3 221 Location: 773 2-7852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), PRK10150 (beta-D-glucuronidase; Provisional), RVT-Retrons, DUF5301 (pfam17225), DUF3221 (pfam11518)